DR403282

Overview
NameDR403282
Unique NameDR403282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_SULAC (50S ribosomal protein L5P OS=Sulfolobus acidocaldarius GN=rpl5p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.674e-25
Identity = 60/172 (34.88%), Postives = 97/172 (56.40%), Query Frame = 2
Query:   47 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 559
            E K  N MR + + K+ +NI VGESG+RL +A +++++L+G  PV++K R ++R FG+R+   I   AT+R   A++ L+  L    + L + +F + G   FGI EH+ + G +YDP  GI+GMD  + L                   +HRVTKE+A+ + +  +   IL
Sbjct:    5 EAKKENVMRRVVLDKVTVNIGVGESGERLQKAYQLVQELTGVKPVYTKGRKSIREFGVRKGAPIGVKATLRRQAAVEFLKKVLPAVNFRLKQSSFDNYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGYRTMKRKRKKASIPRRHRVTKEEAINFMKENFNVTIL 176          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_NANEQ (50S ribosomal protein L5P OS=Nanoarchaeum equitans GN=rpl5p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.674e-25
Identity = 62/162 (38.27%), Postives = 101/162 (62.35%), Query Frame = 2
Query:   56 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLL-ESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 535
            + +PMR+I+++K+ LNI VGESG++L +A ++L++L+GQ PV +KA+  V  + IR    I    T+RG+KA ++L E  L   ++++   +F+D G FGFGI E+I + G+KYDP  G+ G++ +V LE                  +HR+ KE+ +KW Q
Sbjct:    1 MEHPMRKIRIEKVTLNIGVGESGEKLDKAYELLKRLTGQKPVKTKAKVRVEQWHIRPGLPIGVKVTLRGEKAYKILKEKLLPAVDFKIKASSFTDRG-FGFGIPEYIMIPGMKYDPELGLIGLEAYVTLERPGYRVERRRIKRSKVGSRHRLNKEEIIKWAQ 161          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_SULTO (50S ribosomal protein L5P OS=Sulfolobus tokodaii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.264e-24
Identity = 60/176 (34.09%), Postives = 102/176 (57.95%), Query Frame = 2
Query:   38 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHR-VTKEDAMKWFQVKYEGVIL 559
            M +E +  NPMR+++++K+ +NI VGE+G+RL +A ++L++L+G  PV++ A+ T+R FG+R+   I    T+RG KA + L   L    + +   +F + G   FGI EH+ + G +YDP  GI+GMD  + L                   +HR V+KE+AM++ +  +   I+
Sbjct:    1 MMAETQTVNPMRKLRLEKVTVNIGVGEAGERLQKAYQLLQELTGVKPVYTIAKRTIREFGVRKGAPIGVKVTLRGKKAEEFLNKVLAAVGHRIKASSFDEYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGFRVARRRRKKAHIPKRHRTVSKEEAMEFLKQNFNVTIV 176          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_METB6 (50S ribosomal protein L5P OS=Methanoregula boonei (strain 6A8) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24
Identity = 56/160 (35.00%), Postives = 90/160 (56.25%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 544
            MR++ + K+V+++ VGESG++L +A  +++ ++ QTP+ S A+ T  +F IR+   I C  T+RG  A   +++ L +    +    F  +G F FGI+EH D  G+ YDP  GI+GMD  VVLE                  + RV KEDA+ + + +Y
Sbjct:    1 MRDVHIDKVVVHMGVGESGEKLVKAENIMKTITKQTPIRSVAKMTQPAFNIRKGAPIGCKVTLRGKPAEDFIKTSLNIVNKTIFESQFDKSGNFSFGIEEHTDFPGMSYDPQIGIFGMDINVVLERNGIRITRRRMQKKKLPEKQRVKKEDAIAFLKKEY 160          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_METST (50S ribosomal protein L5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 61/166 (36.75%), Postives = 91/166 (54.82%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVI 556
            N M++  + K  +NI VGE G++LTRA K++E L  Q PV + ++ T   FGIR+ + IAC  T+RG+KA +++   L   E  +    F   G   FGI+EHID+ G+KYDP  GI+GMD  V  +                    RVTKE++M++ +  +   I
Sbjct:    2 NVMQKPFIAKATINIGVGEGGEKLTRAEKLIETLVDQKPVRTYSKVTNPEFGIRKKQPIACKVTLRGEKADKIISMVLSGLENRIKASQFDKEGNVSFGIREHIDIPGVKYDPDIGIFGMDVSVTFQKPGHRIKERRLRPKKLPQAQRVTKEESMEYMKENFNVTI 167          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_METAC (50S ribosomal protein L5P OS=Methanosarcina acetivorans GN=rpl5p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 60/160 (37.50%), Postives = 88/160 (55.00%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 544
            MR   V+K+++++ VGESG  L  A  +L  ++GQ  V   A+ T+ +F I++NE I C  T+RG KA + LE+ L + E  L R  F   G   FGI+EH D  G++YDP+ G++GMD  VVL+                   HRVT +DA+ +    Y
Sbjct:    1 MRTPIVEKVIVHMGVGESGQHLVNAEDILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQKAQEFLETALGIVEKTLNRSQFDSFGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIAARKIPAGHRVTVDDAIAFLNESY 160          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_PYRAE (50S ribosomal protein L5P OS=Pyrobaculum aerophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.070e-23
Identity = 60/159 (37.74%), Postives = 95/159 (59.75%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 535
            +PM+ I ++K+V+NI VG SG++L +AA +L++L+G  P   +A+ +++ FGIR+ E I    T+R D+A+  L   L+     + + +F D G   FGI+EHI L G+KYDP+ GI+GMD  V L                   +  VTKE+A+++FQ
Sbjct:   13 HPMQRIYIEKVVVNIGVGASGEKLEKAAGLLKELTGAEPSRRRAKKSIKDFGIRKGEPIGVAVTLRRDQAVNFLMRALQAVNNRVKKTSFDDRGNVCFGIKEHILLPGVKYDPAVGIWGMDVCVKLAKPGLRVQLRRRRRSKVGKRQLVTKEEAIEFFQ 171          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_THEVO (50S ribosomal protein L5P OS=Thermoplasma volcanium GN=rpl5p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE 439
            N M+EI + K+V+NI VG++GDRLT+AAKVLE L+G  P  + A+ +VR F IR+   I    T+R D A+  L   L VK+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +VL+
Sbjct:    2 NQMQEIIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKPTQTLAKKSVRDFNIRKRLPIGVKVTLRKDDAVNFLNKALYVKDYKIPDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIVLK 128          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_METLZ (50S ribosomal protein L5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = 2
Query:   83 VQKLVLNISVGESGDRLTRAAKVLEQLS-GQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYE--LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKW 529
            V K+V+++ VGE+G+RL  A  ++  L+ G  P+ S AR T+ +FGIR+ + I C AT+RG KAM  LE  LK    E  L  R F  TG FGFGI+EH D  G  YDP  GIYGMD   V+E                  +  V +E++MK+
Sbjct:    9 VAKVVVHMGVGEAGERLVNAENIMADLTKGAKPIRSYARNTLPAFGIRKGQPIGCKATLRGKKAMDFLEMALKTYAVENVLHTRQFDATGNFGFGIEEHTDFPGQAYDPKIGIYGMDIIAVIEKKGTRTARRKIQQKKINSKLHVAREESMKF 161          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_PICTO (50S ribosomal protein L5P OS=Picrophilus torridus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23
Identity = 62/168 (36.90%), Postives = 91/168 (54.17%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQH-RVTKEDAMKWFQVKYEGVIL 559
            N MREI + K+V+NI VG +G+RL RAAKVLE L+   P F+ A+ TVR F IR+   I    T+R D A+  L+     K+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +V                    +  R++KE+ +K+ Q  +   I+
Sbjct:    7 NSMREIVIDKVVVNIGVGAAGERLNRAAKVLELLTHHKPAFTSAKRTVRDFNIRKGLNIGVKVTLRKDDALSFLKEAFYAKDYKIPVYSFDKNGNAYFGISDYTDFKGMKYDPDIGIFGMDIAIVFRRRGGYRIEKRRIKKMHIPKKMRISKEETIKYLQENFNVKII 174          
The following BLAST results are available for this feature:
BLAST of DR403282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL5_SULAC5.674e-2534.8850S ribosomal protein L5P OS=Sulfolobus acidocalda... [more]
RL5_NANEQ5.674e-2538.2750S ribosomal protein L5P OS=Nanoarchaeum equitans... [more]
RL5_SULTO1.264e-2434.0950S ribosomal protein L5P OS=Sulfolobus tokodaii G... [more]
RL5_METB66.273e-2435.0050S ribosomal protein L5P OS=Methanoregula boonei ... [more]
RL5_METST8.193e-2436.7550S ribosomal protein L5P OS=Methanosphaera stadtm... [more]
RL5_METAC8.193e-2437.5050S ribosomal protein L5P OS=Methanosarcina acetiv... [more]
RL5_PYRAE1.070e-2337.7450S ribosomal protein L5P OS=Pyrobaculum aerophilu... [more]
RL5_THEVO1.397e-2345.6750S ribosomal protein L5P OS=Thermoplasma volcaniu... [more]
RL5_METLZ2.384e-2341.8350S ribosomal protein L5P OS=Methanocorpusculum la... [more]
RL5_PICTO3.113e-2336.9050S ribosomal protein L5P OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H09 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403282 ID=DR403282; Name=DR403282; organism=Citrus sinensis; type=EST; length=679bp
GGGGGCAGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGA
AGAAACTTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTC
AACATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGT
GCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACA
CTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGCG
ACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGT
GAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTG
GCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCC
ACTGGAATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTA
TCGTGTAGGTCGACGCCGTAGGTGCAAGTCTCGTGTTGGGATTCAGCACC
GTGTCACGAAGGAAGATGCGATGAAATGGTTCCAGGTCAAATACGAAGGT
GTGATCCTCAACAAGTCCCAGAATATTGGTGCTTAAGCCCTTTGTGTGAT
GACGATTTTGCATTTATAGTGTTGATGTTTGTAGACACTGGCTATTACTT
GGCGTTTTGCACACCTGAGTTAGATGCTT
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