DR403282

Overview
NameDR403282
Unique NameDR403282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:43..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_METMJ (50S ribosomal protein L5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23
Identity = 59/160 (36.88%), Postives = 90/160 (56.25%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 544
            M++I + K+V+++ VGESG+RL +A  +++Q++GQ PV + A+ T  +FGIR+   I C  T+R + A + + + L + E  L    F  TG   FGI+EH D  G+ YDP+ GIYGMD  VVLE                    +V KE+A+ +    Y
Sbjct:    4 MKDIYIDKVVVHMGVGESGERLVKAEDLVKQITGQKPVRTIAKRTQPAFGIRKGAPIGCKVTLRRENAEKFITTALDIIERRLAPSQFDRTGNVSFGIEEHTDFPGMSYDPTIGIYGMDVNVVLEYKGARIARRSVERRKLPADQKVNKEEAIAFMCENY 163          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.066e-23
Identity = 63/165 (38.18%), Postives = 95/165 (57.58%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGV 553
            +PM++I ++K+VLN+ VG+SGD +  A++ LEQ+SG+ P    A+ T R +G+R+ E I    T+RGD A  LL+  L+ K   +  R F + G + FGI+EHID+ G+KY+PS GI G+   V L                    H +T ++A K + VK  GV
Sbjct:    7 SPMKKISLEKVVLNMGVGKSGDVIEIASRALEQISGKKPSARNAKETQRDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGILGLGISVTLTRPGYGIRTRSKHKASVGKSHIITSQEA-KDYLVKEFGV 170          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_THEAC (50S ribosomal protein L5P OS=Thermoplasma acidophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.545e-22
Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 433
            NPM E+ + K+V+NI VG++GDRLT+AAKVLE L+G     + A+ ++R F IR+   I    T+R   AM+ L+    VK+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +V
Sbjct:    2 NPMEEVIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKATNTLAKKSIRDFNIRKRLPIGVKVTLRKKDAMEFLQKAFYVKDYKITDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIV 126          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_META3 (50S ribosomal protein L5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.495e-22
Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 2
Query:   65 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 544
            PM + +++K+ +N+ VGESGD+L  A KV+ +++GQ PV + A+ T  +F IR+   I    T+RG KA + L+   +       +L   +F   G F FGI EHID    KYDPS GIYGMD  V  E                  +H V+KE+A+ + +  Y
Sbjct:   11 PMSKPRIEKVTVNMGVGESGDKLLTAEKVVSEITGQKPVRTLAKQTNPAFNIRKKLPIGLKITLRGKKAEEFLKDAFTAFTASGKQLFTYSFDKRGNFSFGIPEHIDFPNQKYDPSVGIYGMDICVTFEKPGYSVKRRKAKRANIPAKHLVSKEEAINYIETIY 174          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_CALMQ (50S ribosomal protein L5P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.495e-22
Identity = 56/159 (35.22%), Postives = 92/159 (57.86%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 535
            +PMR I +  + +N+ +G+SG+RL +AAKV+ +L+G+TP +  A  +++ FGIRR E I    T+R ++A+  L   L   ++ L   +F + G   FGI+EHI + G +YDP+ GI+G D  V L                    HRV++E+ +++FQ
Sbjct:   30 HPMRRIFIWSVAVNMGIGQSGERLEKAAKVMSELTGRTPSYRLAHKSIKDFGIRRGEPIGLLVTLRRNEAVWFLLRALAAVDFTLREESF-NAGNVSFGIREHILVPGSRYDPALGIFGFDVAVTLARPGFRVQYRRRARADVGKDHRVSREETIRFFQ 187          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_CENSY (50S ribosomal protein L5P OS=Cenarchaeum symbiosum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.001e-21
Identity = 62/167 (37.13%), Postives = 90/167 (53.89%), Query Frame = 2
Query:   56 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGV 553
            ++  MR+I ++K+VLN+ VG+SG+ +  A + L ++SG+ P    A  T R FG+R+ E I    T+RG+ A  L     + K  ++  R+F D G F FGI EHID+ GIKYDP  GI G+D  + L                    HR+T  +A K F V+  GV
Sbjct:    1 MAGDMRKITLEKVVLNMGVGQSGNAVEVAKRALGEISGKKPCGRDAHETQRDFGVRKGEPIGAAVTIRGEDAGALARRLFEAKGGQVKGRSFDDFGNFSFGIGEHIDIPGIKYDPGIGILGLDVCMTLSRPGYGIRKRSKHKARVGRSHRITATEA-KDFVVREFGV 166          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_NATPD (50S ribosomal protein L5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.491e-21
Identity = 54/161 (33.54%), Postives = 91/161 (56.52%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 547
            MRE  V+K+V+++ VG  G+ L +A ++LE++  Q PV + A+ T++ F +R  + I   AT+RG+ A + LE+ L + + +  R+ F +TG F FG++EH +    +YDP  GIYG+D  V L                    HR+T EDA+ + +  ++
Sbjct:   13 MREPTVEKVVVHMGVGRGGEPLAQAEEILEEIVEQQPVRTTAQKTIQDFEVREGDPIGTKATLRGEDAEEFLETALPLADID--RKQFDETGNFSFGVEEHTEFPSQEYDPQIGIYGLDVTVNLVRPGYRVHKRDKVSRSIPSNHRLTAEDAVTFLESNFD 171          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_HALMA (50S ribosomal protein L5P OS=Haloarcula marismortui GN=rpl5p PE=1 SV=4)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 54/161 (33.54%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 547
            MRE +++K+V+++ +G  G  L  A  +L +++GQ PV +KA+ TV  F IR  + I    T+R + A + L++ L +   EL    F DTG F FG++EH +    +YDPS GIYG+D  V L                   +HR+   DA+ + +  Y+
Sbjct:   14 MREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLA--ELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYD 172          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_HALLT (50S ribosomal protein L5P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 49/171 (28.65%), Postives = 94/171 (54.97%), Query Frame = 2
Query:   38 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 547
            M+  +  S+ MRE  ++K+V+++ VG+ G+ L  A +++E+++ Q  V + ++ T+  FGIR+ + I    T+RG+ A   L++ L++   ++ +  F DTG   FG+++H D    +YDP+ GIYG+D    +                   +HR+T EDA  + +  ++
Sbjct:    1 MSESESASHEMREPYLEKVVVHMGVGQGGEPLADAEEIIEEITDQQSVRTTSKRTIAEFGIRKGDPIGVKVTLRGEDAHAFLDTALELA--DISKSQFDDTGNLSFGVEDHTDFPSQEYDPNIGIYGLDVTTTIVRPGYRVSKRDKATASIPSKHRMTAEDATAFLETNFD 169          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_HALSA (50S ribosomal protein L5P OS=Halobacterium salinarium GN=rpl5p PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 547
            MRE +++K+V+++ VG+ G  L  A  +LE ++GQ  V +KA+     FG+R+ + I    T+R D A+  LE  L   + +  RR F +TG   FGI+EH D    +YDP+ GIYGMD  V L                    HR+  EDA+ +    ++
Sbjct:   12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170          
The following BLAST results are available for this feature:
BLAST of DR403282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL5_METMJ3.113e-2336.8850S ribosomal protein L5P OS=Methanoculleus marisn... [more]
RL5_NITMS4.066e-2338.1850S ribosomal protein L5P OS=Nitrosopumilus mariti... [more]
RL5_THEAC1.545e-2243.2050S ribosomal protein L5P OS=Thermoplasma acidophi... [more]
RL5_META34.495e-2236.5950S ribosomal protein L5P OS=Methanococcus aeolicu... [more]
RL5_CALMQ4.495e-2235.2250S ribosomal protein L5P OS=Caldivirga maquilinge... [more]
RL5_CENSY1.001e-2137.1350S ribosomal protein L5P OS=Cenarchaeum symbiosum... [more]
RL5_NATPD6.491e-2133.5450S ribosomal protein L5P OS=Natronomonas pharaoni... [more]
RL5_HALMA9.374e-2033.5450S ribosomal protein L5P OS=Haloarcula marismortu... [more]
RL5_HALLT1.224e-1928.6550S ribosomal protein L5P OS=Halorubrum lacusprofu... [more]
RL5_HALSA1.599e-1934.1650S ribosomal protein L5P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H09 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403282 ID=DR403282; Name=DR403282; organism=Citrus sinensis; type=EST; length=679bp
GGGGGCAGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGA
AGAAACTTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTC
AACATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGT
GCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACA
CTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGCG
ACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGT
GAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTG
GCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCC
ACTGGAATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTA
TCGTGTAGGTCGACGCCGTAGGTGCAAGTCTCGTGTTGGGATTCAGCACC
GTGTCACGAAGGAAGATGCGATGAAATGGTTCCAGGTCAAATACGAAGGT
GTGATCCTCAACAAGTCCCAGAATATTGGTGCTTAAGCCCTTTGTGTGAT
GACGATTTTGCATTTATAGTGTTGATGTTTGTAGACACTGGCTATTACTT
GGCGTTTTGCACACCTGAGTTAGATGCTT
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