DR403282

Overview
NameDR403282
Unique NameDR403282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:43..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_HALS3 (50S ribosomal protein L5P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 547
            MRE +++K+V+++ VG+ G  L  A  +LE ++GQ  V +KA+     FG+R+ + I    T+R D A+  LE  L   + +  RR F +TG   FGI+EH D    +YDP+ GIYGMD  V L                    HR+  EDA+ +    ++
Sbjct:   12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_HALWD (50S ribosomal protein L5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 53/170 (31.18%), Postives = 87/170 (51.18%), Query Frame = 2
Query:   38 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 544
            M+      + MRE +++K+V++++VGE G  L  A ++L++++GQT V + A      FG R  + I    T+RG  A   LE  L +    +  R F +TG F FG++EH      +YDP  GIYG+D  V L                   +HR+T  DA+++ + ++
Sbjct:    1 MSETDSTFHEMREPQLEKVVVHMAVGEGGRELANAEEILQEIAGQTAVRTTATRAASQFGAREGDPIGAKVTLRGADAQSFLEKALPL--VTISERQFDETGNFSFGVEEHTTFPSQEYDPQIGIYGLDVTVNLTRPGYRVTKRDKASQPIPSRHRLTPSDAVQFIESEF 168          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_PHEZH (50S ribosomal protein L5 OS=Phenylobacterium zucineum (strain HLK1) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 43/134 (32.09%), Postives = 74/134 (55.22%), Query Frame = 2
Query:   59 SNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 430
            SN M+  K++K+V+N+ VGE+     ++  A   L +++GQ PV +KAR ++  F +R    + C  T+R D+  + L+  +     +VK++  L+  +F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   29 SNEMQIPKLEKIVINMGVGEAVADSKKIQSAMADLAKIAGQKPVSTKARTSIAGFKLREGMTVGCKVTLRKDRMYEFLDRLITIALPRVKDFRGLKPTSFDGRGNYAMGLKEHIVFPEINYDQIDQIWGMDIIV 162          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_XANP2 (50S ribosomal protein L5 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 42/142 (29.58%), Postives = 76/142 (53.52%), Query Frame = 2
Query:   35 RMASEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 430
            +M  +    NPM    + K+V+N+ VGE+     ++T AA  L Q++GQ PV ++AR  + +F +R N+ +    T+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   21 KMIEQFGYKNPMEVPTIDKIVINMGVGEATADTKKVTTAAADLAQIAGQKPVITRARKAISNFKLRENQPVGAKVTLRKARMYEFMDRLVSIALPRVRDFRGLNPKSFDGRGNYAMGVKEHIVFPEINYDRVEQIWGMDIIV 162          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_RHIEC (50S ribosomal protein L5 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = 2
Query:   26 QQTRMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 430
            ++ R A ++K S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV ++AR ++  F +R N  I    T+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   16 ERIRKAMQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_RHIE6 (50S ribosomal protein L5 OS=Rhizobium etli (strain CIAT 652) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = 2
Query:   26 QQTRMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 430
            ++ R A ++K S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV ++AR ++  F +R N  I    T+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   16 ERIRKAMQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of DR403282 vs. ExPASy Swiss-Prot
Match: RL5_AZOC5 (50S ribosomal protein L5 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 43/151 (28.48%), Postives = 81/151 (53.64%), Query Frame = 2
Query:   17 THHQQT---RMASEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYATVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 430
            TH+      ++  E    NPM+   ++K+V+N+ VGE+     ++T AA  L +++GQ PV ++AR  + +F +R N+ +    T+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   12 THYDSVVRPKLIEEFGYKNPMQVPVIEKIVINMGVGEATADTKKVTTAAADLARIAGQKPVLTRARKAISNFKLRENQPVGAKVTLRQARMYEFMDRLITVALPRVRDFRGLNPKSFDGRGNYAMGMKEHIVFPEINYDQVEQIWGMDIIV 162          
The following BLAST results are available for this feature:
BLAST of DR403282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL5_HALS31.599e-1934.1650S ribosomal protein L5P OS=Halobacterium salinar... [more]
RL5_HALWD7.935e-1931.1850S ribosomal protein L5P OS=Haloquadratum walsbyi... [more]
RL5_PHEZH3.570e-1132.0950S ribosomal protein L5 OS=Phenylobacterium zucin... [more]
RL5_XANP24.663e-1129.5850S ribosomal protein L5 OS=Xanthobacter autotroph... [more]
RL5_RHIEC4.663e-1132.6550S ribosomal protein L5 OS=Rhizobium etli (strain... [more]
RL5_RHIE64.663e-1132.6550S ribosomal protein L5 OS=Rhizobium etli (strain... [more]
RL5_AZOC56.090e-1128.4850S ribosomal protein L5 OS=Azorhizobium caulinoda... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H09 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403282 ID=DR403282; Name=DR403282; organism=Citrus sinensis; type=EST; length=679bp
GGGGGCAGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGA
AGAAACTTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTC
AACATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGT
GCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACA
CTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGCG
ACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGT
GAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTG
GCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCC
ACTGGAATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTA
TCGTGTAGGTCGACGCCGTAGGTGCAAGTCTCGTGTTGGGATTCAGCACC
GTGTCACGAAGGAAGATGCGATGAAATGGTTCCAGGTCAAATACGAAGGT
GTGATCCTCAACAAGTCCCAGAATATTGGTGCTTAAGCCCTTTGTGTGAT
GACGATTTTGCATTTATAGTGTTGATGTTTGTAGACACTGGCTATTACTT
GGCGTTTTGCACACCTGAGTTAGATGCTT
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