DR403279

Overview
NameDR403279
Unique NameDR403279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403279_ssr9 microsatellite DR403279_ssr9:9..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12102 contig Csv1_Contig12102:1..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403279 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 91/205 (44.39%), Postives = 129/205 (62.93%), Query Frame = 3 
Query:   84 LSIGGTGYIGKFIVEASVKAGHPTFVLVRESTVSGPSKSQLLDHFKNLGVKIVVGDVLNHESLVKAIKQ--VDVVISTVGHALLADQVKIIAAIKEAGNVKRFFPSGFGNDVDRVHGAVEPTKSTYDVKAKIRRAVEAEGIPYTYVESYFFDGYFLPNLLQPGATAPPRDKVVIFGDGNPKVYNKE-DDIGTYTIKAVDDPRTLN 689
            L +GGTG+IG+FI +AS+  G+PTF+LVR   VS PSK+ ++  F++ G K++ G + + E + K +K+  +DVVIS VG A L DQ+ ++ AIK    +KRF PS FG+DVDR    VEP  + Y  K  +RRAVE  GIP+T +       +   +   P    PP D+  I+GDGN K Y  + +DIG +T+K +DD RTLN
Sbjct:   16 LVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRT-DPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLN 218
The following BLAST results are available for this feature:
BLAST of DR403279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN9.256e-3944.39Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H06 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403279 ID=DR403279; Name=DR403279; organism=Citrus sinensis; type=EST; length=689bp
GCCGGGGGAATAATAATAATAATAATAATAATNNNNANNNNCTCCGGAAT
TGAACTGAACGAGTTTCAGAAATGGCATCGATTCTATCCATCGGCGGGAC
AGGGTATATCGGTAAATTCATCGTGGAAGCAAGCGTGAAAGCCGGCCACC
CGACGTTCGTGCTCGTGAGGGAATCCACAGTCTCAGGTCCTTCCAAATCT
CAGCTCCTCGACCACTTCAAAAACCTCGGCGTCAAAATCGTTGTCGGAGA
TGTTTTGAATCACGAGAGTTTGGTGAAGGCGATAAAACAAGTGGACGTGG
TGATATCGACAGTCGGTCACGCTTTATTAGCCGATCAGGTCAAGATTATT
GCTGCCATTAAAGAAGCCGGTAACGTTAAGAGATTCTTCCCATCGGGATT
TGGAAATGATGTTGATCGAGTCCATGGCGCCGTGGAGCCAACAAAATCGA
CGTATGACGTAAAGGCGAAAATCCGCCGAGCCGTTGAGGCAGAAGGCATT
CCGTACACTTACGTAGAATCTTATTTTTTTGATGGCTACTTCCTCCCTAA
TTTGTTGCAGCCTGGGGCCACTGCCCCCCCTAGGGATAAGGTTGTCATCT
TCGGCGATGGAAATCCAAAAGTTTATAACAAGGAGGATGATATTGGAACC
TACACTATCAAAGCAGTTGATGATCCGAGAACCTTGAAC
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