DR403275

Overview
NameDR403275
Unique NameDR403275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1849..2227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_HELAN (ATP synthase subunit alpha, chloroplastic OS=Helianthus annuus GN=atpA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.862e-35
Identity = 75/99 (75.76%), Postives = 80/99 (80.81%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL VEEQI+TIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLAVEEQILTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEAILKEAIQEQRERFILQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_SOLTU (ATP synthase subunit alpha, chloroplastic OS=Solanum tuberosum GN=atpA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.197e-34
Identity = 75/99 (75.76%), Postives = 79/99 (79.80%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKT KPQFQEIISSTK FT                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTTKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_SOLLC (ATP synthase subunit alpha, chloroplastic OS=Solanum lycopersicum GN=atpA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.197e-34
Identity = 75/99 (75.76%), Postives = 79/99 (79.80%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKT KPQFQEIISSTK FT                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTTKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_SOLBU (ATP synthase subunit alpha, chloroplastic OS=Solanum bulbocastanum GN=atpA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.197e-34
Identity = 75/99 (75.76%), Postives = 79/99 (79.80%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKT KPQFQEIISSTK FT                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTTKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_MORIN (ATP synthase subunit alpha, chloroplastic OS=Morus indica GN=atpA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.197e-34
Identity = 76/99 (76.77%), Postives = 79/99 (79.80%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL VEEQI+TIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RFLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLAVEEQIITIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTKEAEALLKEAIQEQMERFLLQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_BUXMI (ATP synthase subunit alpha, chloroplastic OS=Buxus microphylla GN=atpA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.870e-34
Identity = 75/99 (75.76%), Postives = 80/99 (80.81%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQI+TIYTGTNGYLDSLEIGQV+KFLV+LRTYLKTNKPQFQEIISSTK FT                RFLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIVTIYTGTNGYLDSLEIGQVKKFLVQLRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMERFLLQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_SILLA (ATP synthase subunit alpha, chloroplastic OS=Silene latifolia GN=atpA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.895e-34
Identity = 76/99 (76.77%), Postives = 78/99 (78.79%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ Q+ PLTVEEQIMTIYTGTNGYLDSLEIGQVRKF+VELRTYLKTNK QFQEIISSTK FT                RFLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQPQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFIVELRTYLKTNKSQFQEIISSTKTFTEEAEALLKEAIQEQMERFLLQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_PANGI (ATP synthase subunit alpha, chloroplastic OS=Panax ginseng GN=atpA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.895e-34
Identity = 75/99 (75.76%), Postives = 79/99 (79.80%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLD LEIGQVRKFLVELRTYLKTNKP+FQEIISSTK FT                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDLLEIGQVRKFLVELRTYLKTNKPKFQEIISSTKTFTEEAEALLKEAIQEQTDRFILQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_LACSA (ATP synthase subunit alpha, chloroplastic OS=Lactuca sativa GN=atpA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.393e-34
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL VEEQ++TIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLGVEEQVLTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEAILKEAIKEQRERFILQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_PLAOC (ATP synthase subunit alpha, chloroplastic OS=Platanus occidentalis GN=atpA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.349e-34
Identity = 74/99 (74.75%), Postives = 80/99 (80.81%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQI+TIYTGTNGYLDSLEIGQV+KFLV+LRTYLKTNKPQFQEIISS+K FT                RFLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIVTIYTGTNGYLDSLEIGQVKKFLVQLRTYLKTNKPQFQEIISSSKTFTEEAEALLKEAIQEQMERFLLQEQ 506
The following BLAST results are available for this feature:
BLAST of DR403275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ATPA_HELAN9.862e-3575.76ATP synthase subunit alpha, chloroplastic OS=Helia... [more]
ATPA_SOLTU2.197e-3475.76ATP synthase subunit alpha, chloroplastic OS=Solan... [more]
ATPA_SOLLC2.197e-3475.76ATP synthase subunit alpha, chloroplastic OS=Solan... [more]
ATPA_SOLBU2.197e-3475.76ATP synthase subunit alpha, chloroplastic OS=Solan... [more]
ATPA_MORIN2.197e-3476.77ATP synthase subunit alpha, chloroplastic OS=Morus... [more]
ATPA_BUXMI2.870e-3475.76ATP synthase subunit alpha, chloroplastic OS=Buxus... [more]
ATPA_SILLA4.895e-3476.77ATP synthase subunit alpha, chloroplastic OS=Silen... [more]
ATPA_PANGI4.895e-3475.76ATP synthase subunit alpha, chloroplastic OS=Panax... [more]
ATPA_LACSA6.393e-3474.75ATP synthase subunit alpha, chloroplastic OS=Lactu... [more]
ATPA_PLAOC8.349e-3474.75ATP synthase subunit alpha, chloroplastic OS=Plata... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403275 ID=DR403275; Name=DR403275; organism=Citrus sinensis; type=EST; length=379bp
GGGCTCAGAACCAATTGGCAATGGGTCAACGCTTACGTGAGTTGCTCAAA
CAGGCCCAAGCANNNCCTCTCACGGTGGAAGAACAGATAATGACTATTTA
TACAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAA
AATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTC
CAAGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCT
TTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAAC
AATTCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAC
AAAAAAAAAAAAAAAAAAAGAAAAAAAAA
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