DR403275

Overview
NameDR403275
Unique NameDR403275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_WELMI (ATP synthase subunit alpha, chloroplastic OS=Welwitschia mirabilis GN=atpA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.520e-22
Identity = 50/76 (65.79%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            ++ LA GQRLRE+LKQ+Q+ PL VEEQI TI+TGTNGYLD +E+ QV+ FL +LR YLK NKPQF EII +T+ FT
Sbjct:  408 RDNLARGQRLREMLKQSQSSPLAVEEQIATIFTGTNGYLDKIEVKQVKTFLDQLRKYLKKNKPQFGEIIRTTRTFT 483          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CHLAT (ATP synthase subunit alpha, chloroplastic OS=Chlorokybus atmophyticus GN=atpA PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.638e-21
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            QNQLA G+RLRELLKQAQA PL+VEEQ+ TIYTG NGYLDS+E+  VRKFL  LR ++  + P+  EI+ +TK FT
Sbjct:  408 QNQLARGRRLRELLKQAQAAPLSVEEQVSTIYTGINGYLDSIEVEDVRKFLAGLRGFIAKSYPKVYEIVRTTKTFT 483          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_SCEOB (ATP synthase subunit alpha, chloroplastic OS=Scenedesmus obliquus GN=atpA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.806e-20
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            Q QLA G RLRE+LKQ Q  PL+VEEQ+ +IYTGTNGYLDSLE+  VR FL  LRTYL  N PQ+ EI+  T  FT
Sbjct:  408 QKQLARGSRLREILKQPQNSPLSVEEQVASIYTGTNGYLDSLEVLDVRPFLSGLRTYLTNNVPQYGEIVRKTNTFT 483          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_EUGGR (ATP synthase subunit alpha, chloroplastic OS=Euglena gracilis GN=atpA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.806e-20
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            QNQLA G RLRELLKQ QA PL+V +Q+ TIYTG NGYLD + +  VR FL+ELR ++   KP F+EII+ TK FT
Sbjct:  408 QNQLARGARLRELLKQPQASPLSVADQVATIYTGINGYLDDINLEDVRGFLIELREHINNEKPTFKEIINKTKTFT 483          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_GUITH (ATP synthase subunit alpha, chloroplastic OS=Guillardia theta GN=atpA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.862e-20
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIF 230
            +NQLA GQRLRE+LKQ Q  P++VEEQ+  IYTG NGYLD + + +VR+F+  LRT LK +KPQ+ EII +TK F
Sbjct:  408 RNQLARGQRLREILKQPQNSPISVEEQVAIIYTGINGYLDDIAVDKVRRFVTNLRTNLKNSKPQYAEIIRNTKTF 482          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_OLTVI (ATP synthase subunit alpha, chloroplastic OS=Oltmannsiellopsis viridis GN=atpA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.962e-20
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            QNQLA G+RLRELLKQAQ  PL + +Q+ TIY G NGYLD++E  +VR FL+E R YL +NKP+F EII  T   T
Sbjct:  408 QNQLARGKRLRELLKQAQNSPLALADQVATIYAGCNGYLDTVETEEVRSFLIEFRQYLNSNKPKFGEIIRETNTLT 483          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CHLVU (ATP synthase subunit alpha, chloroplastic OS=Chlorella vulgaris GN=atpA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            QNQLA GQRLRELLKQ+Q+ PL++E+Q+ +IY GTNGYLD L   +VR FLV LR YL TNK ++ EI+ ST   T
Sbjct:  408 QNQLARGQRLRELLKQSQSSPLSLEDQVASIYAGTNGYLDVLPADRVRAFLVGLRQYLATNKAKYGEILRSTNALT 483          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CHLRE (ATP synthase subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii GN=atpA PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.996e-19
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            QNQLA G RLRE+LKQ Q+ PL+VEEQ+ ++Y GTNGYLD LE+ QVR +L  LR+YL  + P++ EI+ ST  FT
Sbjct:  408 QNQLARGARLREILKQPQSSPLSVEEQVASLYAGTNGYLDKLEVSQVRAYLSGLRSYLANSYPKYGEILRSTLTFT 483          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_OSTTA (ATP synthase subunit alpha, chloroplastic OS=Ostreococcus tauri GN=atpA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.607e-19
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIF 230
            QNQLA G RLRELLKQAQ  PL+V+ Q+ TIYTGT G+LD L +GQVR FL  LR Y+KTNK  F   ++S+K F
Sbjct:  408 QNQLARGARLRELLKQAQNQPLSVDMQVATIYTGTQGHLDDLAVGQVRSFLTGLREYIKTNKASFCSDVTSSKKF 482          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_THEEB (ATP synthase subunit alpha OS=Thermosynechococcus elongatus (strain BP-1) GN=atpA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.587e-19
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK 224
            QNQLA GQRLRE+LKQ Q  P+ VE Q+ TIY GTNGYLD + +  V KF+  LR YL+TNKP++ EII +T+
Sbjct:  408 QNQLARGQRLREILKQPQYSPIPVEYQVATIYAGTNGYLDDIPVEAVAKFVAGLRDYLRTNKPEYGEIIRTTQ 480          
The following BLAST results are available for this feature:
BLAST of DR403275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ATPA_WELMI2.520e-2265.79ATP synthase subunit alpha, chloroplastic OS=Welwi... [more]
ATPA_CHLAT3.638e-2164.47ATP synthase subunit alpha, chloroplastic OS=Chlor... [more]
ATPA_SCEOB1.806e-2064.47ATP synthase subunit alpha, chloroplastic OS=Scene... [more]
ATPA_EUGGR1.806e-2061.84ATP synthase subunit alpha, chloroplastic OS=Eugle... [more]
ATPA_GUITH6.862e-2060.00ATP synthase subunit alpha, chloroplastic OS=Guill... [more]
ATPA_OLTVI8.962e-2060.53ATP synthase subunit alpha, chloroplastic OS=Oltma... [more]
ATPA_CHLVU1.529e-1961.84ATP synthase subunit alpha, chloroplastic OS=Chlor... [more]
ATPA_CHLRE1.996e-1959.21ATP synthase subunit alpha, chloroplastic OS=Chlam... [more]
ATPA_OSTTA2.607e-1962.67ATP synthase subunit alpha, chloroplastic OS=Ostre... [more]
ATPA_THEEB7.587e-1960.27ATP synthase subunit alpha OS=Thermosynechococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403275 ID=DR403275; Name=DR403275; organism=Citrus sinensis; type=EST; length=379bp
GGGCTCAGAACCAATTGGCAATGGGTCAACGCTTACGTGAGTTGCTCAAA
CAGGCCCAAGCANNNCCTCTCACGGTGGAAGAACAGATAATGACTATTTA
TACAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAA
AATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTC
CAAGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCT
TTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAAC
AATTCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAC
AAAAAAAAAAAAAAAAAAAGAAAAAAAAA
back to top