DR403275

Overview
NameDR403275
Unique NameDR403275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1849..2227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CUCSA (ATP synthase subunit alpha, chloroplastic OS=Cucumis sativus GN=atpA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.424e-33
Identity = 73/99 (73.74%), Postives = 79/99 (79.80%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTV+EQIMT+YTGTNGYLDSLEI QVRKFLVELRTY+KTNKPQFQEIISSTK FT                RFLLQ+Q
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVDEQIMTVYTGTNGYLDSLEIAQVRKFLVELRTYVKTNKPQFQEIISSTKTFTPEAEVLLKEAIQEQMERFLLQDQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_RANMC (ATP synthase subunit alpha, chloroplastic OS=Ranunculus macranthus GN=atpA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.860e-33
Identity = 73/99 (73.74%), Postives = 80/99 (80.81%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA PLTVEEQ++TIYTGTNGYLDSLEIGQV+KFLV+LRTYLK++KPQFQEIISSTK FT                RFLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQAAPLTVEEQVVTIYTGTNGYLDSLEIGQVKKFLVQLRTYLKSSKPQFQEIISSTKTFTEEAEVLLKEAIQEQMERFLLQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_LEPVR (ATP synthase subunit alpha, chloroplastic OS=Lepidium virginicum GN=atpA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.860e-33
Identity = 74/99 (74.75%), Postives = 78/99 (78.79%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEIISSTK  T                RFLLQE+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIISSTKTLTPEAESLLKEGIQEQLERFLLQEK 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ARAHI (ATP synthase subunit alpha, chloroplastic OS=Arabis hirsuta GN=atpA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.860e-33
Identity = 74/99 (74.75%), Postives = 78/99 (78.79%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEIISSTK  T                RFLLQE+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIISSTKTLTAEAESFLKEGIQEQLERFLLQEK 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_AETGR (ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflora GN=atpA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.860e-33
Identity = 74/99 (74.75%), Postives = 78/99 (78.79%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEIISSTK  T                RFLLQE+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIISSTKTLTDEAESVLKEGIQEQLERFLLQEK 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_AETCO (ATP synthase subunit alpha, chloroplastic OS=Aethionema cordifolium GN=atpA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.860e-33
Identity = 74/99 (74.75%), Postives = 78/99 (78.79%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEIISSTK  T                RFLLQE+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIISSTKTLTNEAESVLKEGIQEQLERFLLQEK 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_NANDO (ATP synthase subunit alpha, chloroplastic OS=Nandina domestica GN=atpA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.429e-33
Identity = 74/99 (74.75%), Postives = 78/99 (78.79%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA PLTV EQI+TIYTGTNGYLDSLEIGQV+KFLVELRTYLKTNKPQFQEIISSTK  T                RF+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQAAPLTVGEQILTIYTGTNGYLDSLEIGQVKKFLVELRTYLKTNKPQFQEIISSTKTLTEEAEVLLKEAIQEQTERFILQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_GOSHI (ATP synthase subunit alpha, chloroplastic OS=Gossypium hirsutum GN=atpA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.429e-33
Identity = 75/99 (75.76%), Postives = 77/99 (77.78%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTV EQI TIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVAEQISTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETLLKDAIQDQMERFRLQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_GOSBA (ATP synthase subunit alpha, chloroplastic OS=Gossypium barbadense GN=atpA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.429e-33
Identity = 75/99 (75.76%), Postives = 77/99 (77.78%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTV EQI TIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVAEQISTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETLLKDAIQDQMERFRLQEQ 506
[Close]
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_BARVE (ATP synthase subunit alpha, chloroplastic OS=Barbarea verna GN=atpA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.429e-33
Identity = 73/99 (73.74%), Postives = 78/99 (78.79%), Query Frame = 3 
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQ+MTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEIISSTK  T                RFLLQE+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQVMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIISSTKTLTAEAESVLKEGIQEQLERFLLQEK 506
The following BLAST results are available for this feature:
BLAST of DR403275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ATPA_CUCSA1.424e-3373.74ATP synthase subunit alpha, chloroplastic OS=Cucum... [more]
ATPA_RANMC1.860e-3373.74ATP synthase subunit alpha, chloroplastic OS=Ranun... [more]
ATPA_LEPVR1.860e-3374.75ATP synthase subunit alpha, chloroplastic OS=Lepid... [more]
ATPA_ARAHI1.860e-3374.75ATP synthase subunit alpha, chloroplastic OS=Arabi... [more]
ATPA_AETGR1.860e-3374.75ATP synthase subunit alpha, chloroplastic OS=Aethi... [more]
ATPA_AETCO1.860e-3374.75ATP synthase subunit alpha, chloroplastic OS=Aethi... [more]
ATPA_NANDO2.429e-3374.75ATP synthase subunit alpha, chloroplastic OS=Nandi... [more]
ATPA_GOSHI2.429e-3375.76ATP synthase subunit alpha, chloroplastic OS=Gossy... [more]
ATPA_GOSBA2.429e-3375.76ATP synthase subunit alpha, chloroplastic OS=Gossy... [more]
ATPA_BARVE2.429e-3373.74ATP synthase subunit alpha, chloroplastic OS=Barba... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403275 ID=DR403275; Name=DR403275; organism=Citrus sinensis; type=EST; length=379bp
GGGCTCAGAACCAATTGGCAATGGGTCAACGCTTACGTGAGTTGCTCAAA
CAGGCCCAAGCANNNCCTCTCACGGTGGAAGAACAGATAATGACTATTTA
TACAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAA
AATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTC
CAAGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCT
TTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAAC
AATTCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAC
AAAAAAAAAAAAAAAAAAAGAAAAAAAAA
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