DR403275

Overview
NameDR403275
Unique NameDR403275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1849..2227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_POPTR (ATP synthase subunit alpha, chloroplastic OS=Populus trichocarpa GN=atpA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.144e-33
Identity = 75/99 (75.76%), Postives = 77/99 (77.78%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA P TV EQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKT+K QFQEIISSTK FT                RFLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQAAPFTVAEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTSKTQFQEIISSTKTFTEEAEALLKEAIQEQMERFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_POPAL (ATP synthase subunit alpha, chloroplastic OS=Populus alba GN=atpA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.144e-33
Identity = 75/99 (75.76%), Postives = 77/99 (77.78%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA P TV EQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKT+K QFQEIISSTK FT                RFLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQAAPFTVAEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTSKTQFQEIISSTKTFTEEAEALLKEAIQEQMERFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_OLIPU (ATP synthase subunit alpha, chloroplastic OS=Olimarabidopsis pumila GN=atpA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.144e-33
Identity = 73/99 (73.74%), Postives = 78/99 (78.79%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEII+STK  T                RFLLQE+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIIASTKTLTAEAESFLKEGIQEQLERFLLQEK 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CRUWA (ATP synthase subunit alpha, chloroplastic OS=Crucihimalaya wallichii GN=atpA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.144e-33
Identity = 73/99 (73.74%), Postives = 78/99 (78.79%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEII+STK  T                RFLLQE+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIIASTKTLTAEAESFLKEGIQEQLERFLLQEK 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CAPBU (ATP synthase subunit alpha, chloroplastic OS=Capsella bursa-pastoris GN=atpA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.144e-33
Identity = 73/99 (73.74%), Postives = 78/99 (78.79%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEII+STK  T                RFLLQE+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIIASTKTLTAEAESFLKEGIQEQLERFLLQEK 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ARATH (ATP synthase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=atpA PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.144e-33
Identity = 73/99 (73.74%), Postives = 78/99 (78.79%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEII+STK  T                RFLLQE+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIIASTKTLTAEAESFLKEGIQEQLERFLLQEK 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_SPIOL (ATP synthase subunit alpha, chloroplastic OS=Spinacia oleracea GN=atpA PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.412e-33
Identity = 72/99 (72.73%), Postives = 78/99 (78.79%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ Q+ PLTVEEQ+MTIYTGTNGYLDSLE+ QVRK+LVELRTY+KTNKP+FQEIISSTK FT                RFLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQMERFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_COFAR (ATP synthase subunit alpha, chloroplastic OS=Coffea arabica GN=atpA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.068e-33
Identity = 74/99 (74.75%), Postives = 76/99 (76.77%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA PL VEEQIMTIYTGT GYLDSLEIGQVRKFLV LR Y+KTNKPQFQEIISSTK FT                RFLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQAAPLAVEEQIMTIYTGTTGYLDSLEIGQVRKFLVALRAYVKTNKPQFQEIISSTKTFTEEAESLLKEAIQEQMDRFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_LOBMA (ATP synthase subunit alpha, chloroplastic OS=Lobularia maritima GN=atpA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.231e-33
Identity = 73/99 (73.74%), Postives = 77/99 (77.78%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLD LEIGQVR FLV+LRTYLKTNKPQFQEIISSTK  T                RFLLQE+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRTFLVQLRTYLKTNKPQFQEIISSTKTLTPEAESFLKEGIQEQLERFLLQEK 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_NASOF (ATP synthase subunit alpha, chloroplastic OS=Nasturtium officinale GN=atpA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.206e-32
Identity = 72/97 (74.23%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQ 296
            QNQLA GQRLRELLKQ+Q+ PLTVEEQ+MTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEIISSTK  T                RFLLQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQVMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIISSTKTLTPEAESVLKEGIQEQLERFLLQ 504          
The following BLAST results are available for this feature:
BLAST of DR403275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ATPA_POPTR4.144e-3375.76ATP synthase subunit alpha, chloroplastic OS=Popul... [more]
ATPA_POPAL4.144e-3375.76ATP synthase subunit alpha, chloroplastic OS=Popul... [more]
ATPA_OLIPU4.144e-3373.74ATP synthase subunit alpha, chloroplastic OS=Olima... [more]
ATPA_CRUWA4.144e-3373.74ATP synthase subunit alpha, chloroplastic OS=Cruci... [more]
ATPA_CAPBU4.144e-3373.74ATP synthase subunit alpha, chloroplastic OS=Capse... [more]
ATPA_ARATH4.144e-3373.74ATP synthase subunit alpha, chloroplastic OS=Arabi... [more]
ATPA_SPIOL5.412e-3372.73ATP synthase subunit alpha, chloroplastic OS=Spina... [more]
ATPA_COFAR7.068e-3374.75ATP synthase subunit alpha, chloroplastic OS=Coffe... [more]
ATPA_LOBMA9.231e-3373.74ATP synthase subunit alpha, chloroplastic OS=Lobul... [more]
ATPA_NASOF1.206e-3274.23ATP synthase subunit alpha, chloroplastic OS=Nastu... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403275 ID=DR403275; Name=DR403275; organism=Citrus sinensis; type=EST; length=379bp
GGGCTCAGAACCAATTGGCAATGGGTCAACGCTTACGTGAGTTGCTCAAA
CAGGCCCAAGCANNNCCTCTCACGGTGGAAGAACAGATAATGACTATTTA
TACAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAA
AATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTC
CAAGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCT
TTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAAC
AATTCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAC
AAAAAAAAAAAAAAAAAAAGAAAAAAAAA
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