DR403275

Overview
NameDR403275
Unique NameDR403275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1849..2227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_DRANE (ATP synthase subunit alpha, chloroplastic OS=Draba nemorosa GN=atpA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.206e-32
Identity = 73/99 (73.74%), Postives = 77/99 (77.78%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQIMTIYTGTNGYLD LEIGQVRKFLV+LRTYLKTNKPQFQEIISSTK  T                RFLL E+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDGLEIGQVRKFLVQLRTYLKTNKPQFQEIISSTKTLTAEAESFLKEGIQEQLERFLLLEK 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_SOYBN (ATP synthase subunit alpha, chloroplastic OS=Glycine max GN=atpA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.575e-32
Identity = 73/99 (73.74%), Postives = 77/99 (77.78%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQI+TIYTGTNGYLDSLEIGQVRKFLVELR YL TNKPQF+EIISSTK FT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNGYLDSLEIGQVRKFLVELRAYLNTNKPQFKEIISSTKTFTGEAEVLLKEAIQEQMELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_NUPAD (ATP synthase subunit alpha, chloroplastic OS=Nuphar advena GN=atpA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.575e-32
Identity = 71/99 (71.72%), Postives = 78/99 (78.79%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL V+EQI+TIYTGTNGYLD LEIGQVRKFLV+LRTYL+TNKPQFQEIISSTK+FT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSSPLAVDEQIVTIYTGTNGYLDQLEIGQVRKFLVQLRTYLRTNKPQFQEIISSTKVFTEQAEAILKEAIQEQIELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CHLSC (ATP synthase subunit alpha, chloroplastic OS=Chloranthus spicatus GN=atpA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.575e-32
Identity = 72/99 (72.73%), Postives = 78/99 (78.79%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQI+TIYTG NGYLDSLEIGQV+KFLV+LRTYLKTNKPQFQEIISST+ FT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIVTIYTGANGYLDSLEIGQVKKFLVQLRTYLKTNKPQFQEIISSTRTFTEQAEALLKEIIQEQIELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_LOTJA (ATP synthase subunit alpha, chloroplastic OS=Lotus japonicus GN=atpA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.983e-32
Identity = 72/99 (72.73%), Postives = 76/99 (76.77%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQ++TIYTGTNGYLDSLEI QVRKFLVELR YLKTNKPQF EIISSTK FT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQVITIYTGTNGYLDSLEIRQVRKFLVELRAYLKTNKPQFNEIISSTKTFTGEAEALLKEAIQEQMELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CALFG (ATP synthase subunit alpha, chloroplastic OS=Calycanthus floridus var. glaucus GN=atpA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.983e-32
Identity = 72/99 (72.73%), Postives = 76/99 (76.77%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA PLTVEEQI+TIYTG NGYLD LEIGQV+KFLV+LRTYLKTNKPQ QEIISSTK FT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQAAPLTVEEQIVTIYTGANGYLDPLEIGQVKKFLVQLRTYLKTNKPQLQEIISSTKTFTEEVEALLKEAIPEQIELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_IPOPU (ATP synthase subunit alpha, chloroplastic OS=Ipomoea purpurea GN=atpA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.814e-32
Identity = 69/100 (69.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA GQRLRELLKQ+Q+ PLTV EQI+TI+TG NGYLDSLE+GQV+KF+VELRTYLKTNKP+F+EIISSTKIFT                RFLLQ+Q
Sbjct:  407 SQNQLARGQRLRELLKQSQSAPLTVAEQIITIFTGINGYLDSLELGQVKKFIVELRTYLKTNKPRFEEIISSTKIFTEEAEALLKEAIRDQMDRFLLQQQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_PIPCE (ATP synthase subunit alpha, chloroplastic OS=Piper cenocladum GN=atpA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.021e-31
Identity = 71/99 (71.72%), Postives = 76/99 (76.77%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL VEEQI+TIYTG NGYLD LE GQV+KFLV+LRTYLKTNKPQFQEIISSTKIFT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLAVEEQIVTIYTGANGYLDPLETGQVKKFLVQLRTYLKTNKPQFQEIISSTKIFTKDAEAILKEVIPEQIELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_PHAVU (ATP synthase subunit alpha, chloroplastic OS=Phaseolus vulgaris GN=atpA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.274e-31
Identity = 71/99 (71.72%), Postives = 75/99 (75.76%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQI+TIYTGTNGYLDSLEIGQVRKFLVELR YLKTNKPQF+EIISST   T                 FL QEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIVTIYTGTNGYLDSLEIGQVRKFLVELRAYLKTNKPQFKEIISSTNTLTGEAEALLKDAIKEQMELFLFQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_NYMAL (ATP synthase subunit alpha, chloroplastic OS=Nymphaea alba GN=atpA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.274e-31
Identity = 68/99 (68.69%), Postives = 78/99 (78.79%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL V+EQI+TIYTGTNGYLD LEIGQV+KF+V+LRT+L+TNKPQFQEIISSTK+FT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSSPLAVDEQIVTIYTGTNGYLDQLEIGQVKKFIVQLRTHLRTNKPQFQEIISSTKVFTEQAEALLKEAIQEQMELFLLQEQ 506          
The following BLAST results are available for this feature:
BLAST of DR403275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ATPA_DRANE1.206e-3273.74ATP synthase subunit alpha, chloroplastic OS=Draba... [more]
ATPA_SOYBN1.575e-3273.74ATP synthase subunit alpha, chloroplastic OS=Glyci... [more]
ATPA_NUPAD1.575e-3271.72ATP synthase subunit alpha, chloroplastic OS=Nupha... [more]
ATPA_CHLSC1.575e-3272.73ATP synthase subunit alpha, chloroplastic OS=Chlor... [more]
ATPA_LOTJA5.983e-3272.73ATP synthase subunit alpha, chloroplastic OS=Lotus... [more]
ATPA_CALFG5.983e-3272.73ATP synthase subunit alpha, chloroplastic OS=Calyc... [more]
ATPA_IPOPU7.814e-3269.00ATP synthase subunit alpha, chloroplastic OS=Ipomo... [more]
ATPA_PIPCE1.021e-3171.72ATP synthase subunit alpha, chloroplastic OS=Piper... [more]
ATPA_PHAVU2.274e-3171.72ATP synthase subunit alpha, chloroplastic OS=Phase... [more]
ATPA_NYMAL2.274e-3168.69ATP synthase subunit alpha, chloroplastic OS=Nymph... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403275 ID=DR403275; Name=DR403275; organism=Citrus sinensis; type=EST; length=379bp
GGGCTCAGAACCAATTGGCAATGGGTCAACGCTTACGTGAGTTGCTCAAA
CAGGCCCAAGCANNNCCTCTCACGGTGGAAGAACAGATAATGACTATTTA
TACAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAA
AATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTC
CAAGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCT
TTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAAC
AATTCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAC
AAAAAAAAAAAAAAAAAAAGAAAAAAAAA
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