DR403275

Overview
NameDR403275
Unique NameDR403275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1849..2227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_LIRTU (ATP synthase subunit alpha, chloroplastic OS=Liriodendron tulipifera GN=atpA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.970e-31
Identity = 70/99 (70.71%), Postives = 76/99 (76.77%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVE+QI+TIYTG NGYLD LEIGQV+KFLV+LRTYLKTNKPQ QEIISSTK FT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSTPLTVEDQIVTIYTGANGYLDPLEIGQVKKFLVQLRTYLKTNKPQLQEIISSTKTFTEQAEALLKEAIPEQIELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_DRIGR (ATP synthase subunit alpha, chloroplastic OS=Drimys granadensis GN=atpA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.970e-31
Identity = 69/99 (69.70%), Postives = 77/99 (77.78%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQI+TIYTG NGYLD L+IGQV+KFLV+LRT+LKTNKPQFQEIISSTK FT                 F+LQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQILTIYTGANGYLDPLDIGQVKKFLVQLRTHLKTNKPQFQEIISSTKTFTEQAEALLKEAIPEQMELFILQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CUSRE (ATP synthase subunit alpha, plastid OS=Cuscuta reflexa GN=atpA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.065e-31
Identity = 69/100 (69.00%), Postives = 77/100 (77.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA GQRLRELLKQ+Q+ PLTV EQIMTIYTG NGYLDSL +GQVRKFL+EL TYLKTNKP+FQEI+SSTK FT                RFLL+EQ
Sbjct:  407 SQNQLARGQRLRELLKQSQSAPLTVAEQIMTIYTGINGYLDSLPLGQVRKFLIELCTYLKTNKPRFQEILSSTKTFTEEAEDLLKEAIRDQMDRFLLKEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CERDE (ATP synthase subunit alpha, chloroplastic OS=Ceratophyllum demersum GN=atpA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.615e-31
Identity = 70/99 (70.71%), Postives = 75/99 (75.76%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA PL VEEQ+ TIYTG NGYLDSLEIGQV+KFLV+LRT+LKTNKPQFQEIISSTK  T                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQAAPLRVEEQVATIYTGANGYLDSLEIGQVKKFLVQLRTHLKTNKPQFQEIISSTKTLTGDAEALLKEAIQEQLELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_AMBTC (ATP synthase subunit alpha, chloroplastic OS=Amborella trichopoda GN=atpA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.640e-31
Identity = 68/99 (68.69%), Postives = 75/99 (75.76%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA PL VEEQ++TIYTG NGYLD LEIGQV+KFLV+LRTYL+TNKPQFQEIISST+ FT                 FL QEQ
Sbjct:  408 QNQLARGQRLRELLKQSQAAPLAVEEQVVTIYTGANGYLDPLEIGQVKKFLVQLRTYLRTNKPQFQEIISSTRTFTEEAEAILKEAIQEQIELFLFQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ACOCL (ATP synthase subunit alpha, chloroplastic OS=Acorus calamus GN=atpA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.514e-30
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA G+RLRELLKQ+Q+ PL V+EQ++TIYTGTNGYLD+LEIGQV++FLV+LRTYLK NKPQFQEIISSTK FT                 FLLQEQ
Sbjct:  408 QNQLARGKRLRELLKQSQSEPLAVDEQVVTIYTGTNGYLDTLEIGQVKEFLVKLRTYLKKNKPQFQEIISSTKTFTEEAEALLKEAIQEQLELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ACOAM (ATP synthase subunit alpha, chloroplastic OS=Acorus americanus GN=atpA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.514e-30
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA G+RLRELLKQ+Q+ PL V+EQ++TIYTGTNGYLD+LEIGQV++FLV+LRTYLK NKPQFQEIISSTK FT                 FLLQEQ
Sbjct:  408 QNQLARGKRLRELLKQSQSEPLAVDEQVVTIYTGTNGYLDTLEIGQVKEFLVKLRTYLKKNKPQFQEIISSTKTFTEEAEALLKEAIQEQLELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CUSEX (ATP synthase subunit alpha, plastid OS=Cuscuta exaltata GN=atpA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.288e-30
Identity = 68/100 (68.00%), Postives = 77/100 (77.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA GQRLRELLKQ+Q+ PLTV EQIMTIYTG NGYLDSL++ QVRKFL+EL TYLKTNKP+FQEIISSTK FT                RFL++EQ
Sbjct:  407 SQNQLARGQRLRELLKQSQSAPLTVAEQIMTIYTGINGYLDSLQLRQVRKFLLELCTYLKTNKPRFQEIISSTKTFTEEAEDLLKEAIRDQTDRFLVKEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_LEMMI (ATP synthase subunit alpha, chloroplastic OS=Lemna minor GN=atpA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.314e-30
Identity = 68/99 (68.69%), Postives = 74/99 (74.75%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL V+EQI TI+TG NGYLDSLE+GQVRKFLV+LRTYLK NKPQFQEIISSTK FT                 FL QEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLGVDEQIATIFTGANGYLDSLEVGQVRKFLVQLRTYLKKNKPQFQEIISSTKTFTPEAEALLKEAIQEHIELFLQQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ILLOL (ATP synthase subunit alpha, chloroplastic OS=Illicium oligandrum GN=atpA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.314e-30
Identity = 67/99 (67.68%), Postives = 75/99 (75.76%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ P TVEEQI+TIYTG NGYLD LEIGQV+KFLV+LRT+L+TNKPQFQEII ST+ FT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPFTVEEQIVTIYTGANGYLDLLEIGQVKKFLVQLRTHLRTNKPQFQEIICSTRTFTEQAEALLKEAIQEQIELFLLQEQ 506          
The following BLAST results are available for this feature:
BLAST of DR403275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ATPA_LIRTU2.970e-3170.71ATP synthase subunit alpha, chloroplastic OS=Lirio... [more]
ATPA_DRIGR2.970e-3169.70ATP synthase subunit alpha, chloroplastic OS=Drimy... [more]
ATPA_CUSRE5.065e-3169.00ATP synthase subunit alpha, plastid OS=Cuscuta ref... [more]
ATPA_CERDE6.615e-3170.71ATP synthase subunit alpha, chloroplastic OS=Cerat... [more]
ATPA_AMBTC8.640e-3168.69ATP synthase subunit alpha, chloroplastic OS=Ambor... [more]
ATPA_ACOCL2.514e-3067.68ATP synthase subunit alpha, chloroplastic OS=Acoru... [more]
ATPA_ACOAM2.514e-3067.68ATP synthase subunit alpha, chloroplastic OS=Acoru... [more]
ATPA_CUSEX4.288e-3068.00ATP synthase subunit alpha, plastid OS=Cuscuta exa... [more]
ATPA_LEMMI7.314e-3068.69ATP synthase subunit alpha, chloroplastic OS=Lemna... [more]
ATPA_ILLOL7.314e-3067.68ATP synthase subunit alpha, chloroplastic OS=Illic... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403275 ID=DR403275; Name=DR403275; organism=Citrus sinensis; type=EST; length=379bp
GGGCTCAGAACCAATTGGCAATGGGTCAACGCTTACGTGAGTTGCTCAAA
CAGGCCCAAGCANNNCCTCTCACGGTGGAAGAACAGATAATGACTATTTA
TACAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAA
AATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTC
CAAGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCT
TTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAAC
AATTCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAC
AAAAAAAAAAAAAAAAAAAGAAAAAAAAA
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