DR403275

Overview
NameDR403275
Unique NameDR403275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1849..2227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_OENGL (ATP synthase subunit alpha, chloroplastic OS=Oenothera glazioviana GN=atpA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.248e-29
Identity = 68/99 (68.69%), Postives = 74/99 (74.75%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA PLTV EQI+TIYTGTNGYLDS EI QVRKFL ELR Y+KT KPQF+EIISSTKIFT                 FL+QE+
Sbjct:  408 QNQLARGQRLRELLKQSQAKPLTVAEQILTIYTGTNGYLDSFEIAQVRKFLDELRDYVKTRKPQFEEIISSTKIFTEEAQALLKDAIQEQKELFLVQEK 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_OENPA (ATP synthase subunit alpha, chloroplastic OS=Oenothera parviflora GN=atpA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.629e-29
Identity = 68/98 (69.39%), Postives = 73/98 (74.49%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 299
            QNQLA GQRLRELLKQ+QA PLTV EQI+TIYTGTNGYLDS EI QVRKFL ELR Y+KT KPQF+EIISSTKIFT                 FL+QE
Sbjct:  408 QNQLARGQRLRELLKQSQAKPLTVAEQILTIYTGTNGYLDSFEIAQVRKFLDELRDYVKTRKPQFEEIISSTKIFTEEAQALLKDAIQEQKELFLVQE 505          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_OENEH (ATP synthase subunit alpha, chloroplastic OS=Oenothera elata subsp. hookeri GN=atpA PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.629e-29
Identity = 68/98 (69.39%), Postives = 73/98 (74.49%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 299
            QNQLA GQRLRELLKQ+QA PLTV EQI+TIYTGTNGYLDS EI QVRKFL ELR Y+KT KPQF+EIISSTKIFT                 FL+QE
Sbjct:  408 QNQLARGQRLRELLKQSQAKPLTVAEQILTIYTGTNGYLDSFEIAQVRKFLDELRDYVKTRKPQFEEIISSTKIFTEEAQALLKDAIQEQKELFLVQE 505          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_OENBI (ATP synthase subunit alpha, chloroplastic OS=Oenothera biennis GN=atpA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.629e-29
Identity = 68/98 (69.39%), Postives = 73/98 (74.49%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 299
            QNQLA GQRLRELLKQ+QA PLTV EQI+TIYTGTNGYLDS EI QVRKFL ELR Y+KT KPQF+EIISSTKIFT                 FL+QE
Sbjct:  408 QNQLARGQRLRELLKQSQAKPLTVAEQILTIYTGTNGYLDSFEIAQVRKFLDELRDYVKTRKPQFEEIISSTKIFTEEAQALLKDAIQEQKELFLVQE 505          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_OENAR (ATP synthase subunit alpha, chloroplastic OS=Oenothera argillicola GN=atpA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.629e-29
Identity = 68/98 (69.39%), Postives = 73/98 (74.49%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 299
            QNQLA GQRLRELLKQ+QA PLTV EQI+TIYTGTNGYLDS EI QVRKFL ELR Y+KT KPQF+EIISSTKIFT                 FL+QE
Sbjct:  408 QNQLARGQRLRELLKQSQAKPLTVAEQILTIYTGTNGYLDSFEIAQVRKFLDELRDYVKTRKPQFEEIISSTKIFTEEAQALLKDAIQEQKELFLVQE 505          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_DIOEL (ATP synthase subunit alpha, chloroplastic OS=Dioscorea elephantipes GN=atpA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.128e-29
Identity = 68/99 (68.69%), Postives = 73/99 (73.74%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL VEEQI TIYTG NGYLD LEIGQV+KFLV+LRTYLK NK QF+EIISSTK FT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSDPLAVEEQIATIYTGANGYLDPLEIGQVKKFLVQLRTYLKKNKSQFKEIISSTKTFTEEAEALLKGAVQEQIELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_PHAAO (ATP synthase subunit alpha, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=atpA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.779e-29
Identity = 67/99 (67.68%), Postives = 74/99 (74.75%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL VE+QI TIYTGTNGYLD+LEIGQV+KFLV LRTYL   KP+FQEI+SSTKIFT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSDPLAVEDQIATIYTGTNGYLDALEIGQVKKFLVGLRTYLTKKKPKFQEILSSTKIFTEEAETLLREAIQEQIELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_PELHO (ATP synthase subunit alpha, chloroplastic OS=Pelargonium hortorum GN=atpA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.087e-29
Identity = 66/99 (66.67%), Postives = 74/99 (74.75%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            Q+QLA G+RLRELLKQ+QA PL VEEQIMT+YTG NGYLDSLEIGQVRKFL +LR YLK NKP+FQEIISSTK FT                 F+L+EQ
Sbjct:  408 QSQLARGRRLRELLKQSQADPLAVEEQIMTVYTGINGYLDSLEIGQVRKFLEDLRKYLKGNKPKFQEIISSTKTFTEEAEALLKEAIQEQTELFILKEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_JASNU (ATP synthase subunit alpha, chloroplastic OS=Jasminum nudiflorum GN=atpA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.087e-29
Identity = 67/97 (69.07%), Postives = 73/97 (75.26%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQ 296
            Q+QLA G+RLRELLKQ+Q+ PLTV EQIMT+YTGT GYLDSLEIGQV KFL  LRT+LKTNKPQFQEIISSTK FT                RFLLQ
Sbjct:  408 QSQLARGRRLRELLKQSQSAPLTVGEQIMTVYTGTKGYLDSLEIGQVSKFLDALRTHLKTNKPQFQEIISSTKTFTEEAEVLLKEAIQEQMERFLLQ 504          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_PEA (ATP synthase subunit alpha, chloroplastic OS=Pisum sativum GN=atpA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.379e-28
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            QNQLA GQRLRELLKQ+Q+ PLTVEEQI+TIYTGTN YLDS+EI QVRKF+VELR YLKT KP+F EIISSTK FT
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIITIYTGTNSYLDSVEIAQVRKFIVELRAYLKTKKPKFNEIISSTKTFT 483          
The following BLAST results are available for this feature:
BLAST of DR403275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ATPA_OENGL1.248e-2968.69ATP synthase subunit alpha, chloroplastic OS=Oenot... [more]
ATPA_OENPA1.629e-2969.39ATP synthase subunit alpha, chloroplastic OS=Oenot... [more]
ATPA_OENEH1.629e-2969.39ATP synthase subunit alpha, chloroplastic OS=Oenot... [more]
ATPA_OENBI1.629e-2969.39ATP synthase subunit alpha, chloroplastic OS=Oenot... [more]
ATPA_OENAR1.629e-2969.39ATP synthase subunit alpha, chloroplastic OS=Oenot... [more]
ATPA_DIOEL2.128e-2968.69ATP synthase subunit alpha, chloroplastic OS=Diosc... [more]
ATPA_PHAAO2.779e-2967.68ATP synthase subunit alpha, chloroplastic OS=Phala... [more]
ATPA_PELHO8.087e-2966.67ATP synthase subunit alpha, chloroplastic OS=Pelar... [more]
ATPA_JASNU8.087e-2969.07ATP synthase subunit alpha, chloroplastic OS=Jasmi... [more]
ATPA_PEA1.379e-2881.58ATP synthase subunit alpha, chloroplastic OS=Pisum... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403275 ID=DR403275; Name=DR403275; organism=Citrus sinensis; type=EST; length=379bp
GGGCTCAGAACCAATTGGCAATGGGTCAACGCTTACGTGAGTTGCTCAAA
CAGGCCCAAGCANNNCCTCTCACGGTGGAAGAACAGATAATGACTATTTA
TACAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAA
AATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTC
CAAGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCT
TTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAAC
AATTCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAC
AAAAAAAAAAAAAAAAAAAGAAAAAAAAA
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