DR403275

Overview
NameDR403275
Unique NameDR403275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1849..2227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_HUPLU (ATP synthase subunit alpha, chloroplastic OS=Huperzia lucidula GN=atpA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.941e-28
Identity = 64/99 (64.65%), Postives = 71/99 (71.72%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQ+ TIYTG NGY D LEIGQV+KFLV+ R YL TNKP+F EII STK+FT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQVATIYTGVNGYSDILEIGQVKKFLVQFREYLITNKPKFAEIICSTKVFTEQAEIILKEAIEEHTELFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSJ (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa subsp. japonica GN=atpA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.168e-27
Identity = 66/100 (66.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA G+RLRELLKQ+QA PL VEEQI TIY GT GYLDSLEIGQV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  407 SQNQLARGRRLRELLKQSQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSI (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa subsp. indica GN=atpA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.168e-27
Identity = 66/100 (66.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA G+RLRELLKQ+QA PL VEEQI TIY GT GYLDSLEIGQV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  407 SQNQLARGRRLRELLKQSQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ORYSA (ATP synthase subunit alpha, chloroplastic OS=Oryza sativa GN=atpA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.168e-27
Identity = 66/100 (66.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA G+RLRELLKQ+QA PL VEEQI TIY GT GYLDSLEIGQV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  407 SQNQLARGRRLRELLKQSQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ORYNI (ATP synthase subunit alpha, chloroplastic OS=Oryza nivara GN=atpA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.168e-27
Identity = 66/100 (66.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA G+RLRELLKQ+QA PL VEEQI TIY GT GYLDSLEIGQV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  407 SQNQLARGRRLRELLKQSQANPLPVEEQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_MARPO (ATP synthase subunit alpha, chloroplastic OS=Marchantia polymorpha GN=atpA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.168e-27
Identity = 63/99 (63.64%), Postives = 71/99 (71.72%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL+VEEQI TIYTG NGYLD LE GQV+KFL++LR YL TNKPQF EII STK+FT                 FL QE+
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLSVEEQIATIYTGVNGYLDVLETGQVKKFLIQLREYLVTNKPQFAEIIRSTKVFTEQAENLLKEAITEHIELFLFQEE 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_PHYPA (ATP synthase subunit alpha, chloroplastic OS=Physcomitrella patens GN=atpA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.525e-27
Identity = 63/98 (64.29%), Postives = 70/98 (71.43%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 299
            QNQLA GQRLRELLKQ+Q+ PL VEEQ+ TIYTG NGYLD LE+ QV+KFLV+LR YL TNKPQF EII STK+FT                 FLLQE
Sbjct:  408 QNQLARGQRLRELLKQSQSSPLAVEEQVATIYTGVNGYLDVLEVDQVKKFLVQLREYLTTNKPQFAEIIRSTKVFTEQAEGILKEAIKEHTELFLLQE 505          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ANTFO (ATP synthase subunit alpha, chloroplastic OS=Anthoceros formosae GN=atpA PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.525e-27
Identity = 64/99 (64.65%), Postives = 71/99 (71.72%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL VEEQ+ TIYTG NGYLD LE+ QV+KFLV+LR YL TNKPQF EII STK+FT                 FLLQEQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLAVEEQVATIYTGVNGYLDVLEVEQVKKFLVQLREYLITNKPQFVEIIRSTKVFTEQAEIILKEAIKEHTEFFLLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_SORBI (ATP synthase subunit alpha, chloroplastic OS=Sorghum bicolor GN=atpA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.795e-27
Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA G+RLRELLKQ+Q+ PL VEEQ+ TIYTGT GYLDSLEI QV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  407 SQNQLARGRRLRELLKQSQSNPLPVEEQVATIYTGTRGYLDSLEIEQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEQAETLLKEAIQEQLERFSLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_SACOF (ATP synthase subunit alpha, chloroplastic OS=Saccharum officinarum GN=atpA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.795e-27
Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA G+RLRELLKQ+Q+ PL VEEQ+ TIYTGT GYLDSLEI QV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  407 SQNQLARGRRLRELLKQSQSNPLPVEEQVATIYTGTRGYLDSLEIEQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEQAETLLKEAIQEQLERFSLQEQ 506          
The following BLAST results are available for this feature:
BLAST of DR403275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ATPA_HUPLU8.941e-2864.65ATP synthase subunit alpha, chloroplastic OS=Huper... [more]
ATPA_ORYSJ1.168e-2766.00ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYSI1.168e-2766.00ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYSA1.168e-2766.00ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_ORYNI1.168e-2766.00ATP synthase subunit alpha, chloroplastic OS=Oryza... [more]
ATPA_MARPO1.168e-2763.64ATP synthase subunit alpha, chloroplastic OS=March... [more]
ATPA_PHYPA1.525e-2764.29ATP synthase subunit alpha, chloroplastic OS=Physc... [more]
ATPA_ANTFO1.525e-2764.65ATP synthase subunit alpha, chloroplastic OS=Antho... [more]
ATPA_SORBI5.795e-2764.00ATP synthase subunit alpha, chloroplastic OS=Sorgh... [more]
ATPA_SACOF5.795e-2764.00ATP synthase subunit alpha, chloroplastic OS=Sacch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403275 ID=DR403275; Name=DR403275; organism=Citrus sinensis; type=EST; length=379bp
GGGCTCAGAACCAATTGGCAATGGGTCAACGCTTACGTGAGTTGCTCAAA
CAGGCCCAAGCANNNCCTCTCACGGTGGAAGAACAGATAATGACTATTTA
TACAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAA
AATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTC
CAAGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCT
TTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAAC
AATTCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAC
AAAAAAAAAAAAAAAAAAAGAAAAAAAAA
back to top