DR403275

Overview
NameDR403275
Unique NameDR403275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1849..2227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_SACHY (ATP synthase subunit alpha, chloroplastic OS=Saccharum hybrid GN=atpA PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.795e-27
Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA G+RLRELLKQ+Q+ PL VEEQ+ TIYTGT GYLDSLEI QV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  407 SQNQLARGRRLRELLKQSQSNPLPVEEQVATIYTGTRGYLDSLEIEQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEQAETLLKEAIQEQLERFSLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_MAIZE (ATP synthase subunit alpha, chloroplastic OS=Zea mays GN=atpA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.795e-27
Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA G+RLRELLKQ+Q+ PL VEEQ+ TIYTGT GYLDSLEI QV+KFL ELR +LK  KPQFQEIISS+K FT                RF LQEQ
Sbjct:  407 SQNQLARGRRLRELLKQSQSNPLPVEEQVATIYTGTRGYLDSLEIEQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEQAETLLKEAIQEQLERFSLQEQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CYCTA (ATP synthase subunit alpha, chloroplastic OS=Cycas taitungensis GN=atpA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.569e-27
Identity = 65/99 (65.66%), Postives = 70/99 (70.71%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PLTVEEQI TIY G NGYLD LEI QVRKFLV+LR YL TNKPQF EII ST+ FT                 FLL+EQ
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLTVEEQIATIYAGANGYLDILEIVQVRKFLVQLREYLITNKPQFGEIIRSTRAFTEQAEALLKEAIQEHIELFLLREQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_PSINU (ATP synthase subunit alpha, chloroplastic OS=Psilotum nudum GN=atpA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.885e-27
Identity = 62/99 (62.63%), Postives = 72/99 (72.73%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL+VEEQ+ TIYTG NGYLD L++ QV++FLV+LR YL TNKPQF EII STKIFT                 FLLQE+
Sbjct:  410 QNQLARGQRLRELLKQSQSAPLSVEEQVATIYTGVNGYLDILKVEQVKRFLVQLREYLVTNKPQFGEIIRSTKIFTEDAESILRVAIREYTELFLLQEK 508          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_LOLPR (ATP synthase subunit alpha, chloroplastic OS=Lolium perenne GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.876e-26
Identity = 63/100 (63.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QNQLA G+RLRELLKQ+QA PL VEEQI TIYTGT GYLDSLEI QV KFL +LR +LK  KPQFQEI+SS+K FT                RF LQ+Q
Sbjct:  407 SQNQLARGRRLRELLKQSQANPLPVEEQIATIYTGTRGYLDSLEIEQVNKFLDDLRKHLKDTKPQFQEILSSSKTFTEQAEILLKEAIQEQLERFSLQQQ 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CUSGR (ATP synthase subunit alpha, plastid OS=Cuscuta gronovii GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.876e-26
Identity = 61/100 (61.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            +QN LA GQRLRELLKQ+Q+ PLT  EQIM+IY G NGYLDSLE+GQ+ KFL EL  YLK NKP+FQEII+STK FT                RFLL+E+
Sbjct:  407 SQNLLARGQRLRELLKQSQSAPLTTAEQIMSIYAGINGYLDSLELGQIGKFLRELSDYLKVNKPRFQEIINSTKTFTEEAEAILKDTIPSEKDRFLLEEK 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_AGRST (ATP synthase subunit alpha, chloroplastic OS=Agrostis stolonifera GN=atpA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.876e-26
Identity = 64/99 (64.65%), Postives = 70/99 (70.71%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 299
            +QNQLA G+RLRELLKQ+QA PL VEEQI TIYTGT GYLDSLEI QV KFL ELR +LK  KPQFQEIISS+K FT                RF LQ+
Sbjct:  407 SQNQLARGRRLRELLKQSQANPLPVEEQIATIYTGTRGYLDSLEIEQVNKFLDELRKHLKDTKPQFQEIISSSKTFTEQAEILLKEAIQEQLERFSLQQ 505          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_WHEAT (ATP synthase subunit alpha, chloroplastic OS=Triticum aestivum GN=atpA PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.906e-26
Identity = 64/98 (65.31%), Postives = 69/98 (70.41%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQ 296
            +QNQLA G+RLRELLKQ+QA PL VEEQI TIYTGT GYLDSLEI QV KFL ELR +LK  KPQFQEIISS+K FT                RF LQ
Sbjct:  407 SQNQLARGRRLRELLKQSQANPLPVEEQIATIYTGTRGYLDSLEIEQVNKFLDELRKHLKDTKPQFQEIISSSKTFTEQAEILLKEAIQEQLERFSLQ 504          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_HORVU (ATP synthase subunit alpha, chloroplastic OS=Hordeum vulgare GN=atpA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.906e-26
Identity = 64/98 (65.31%), Postives = 69/98 (70.41%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQ 296
            +QNQLA G+RLRELLKQ+QA PL VEEQI TIYTGT GYLDSLEI QV KFL ELR +LK  KPQFQEIISS+K FT                RF LQ
Sbjct:  407 SQNQLARGRRLRELLKQSQANPLPVEEQIATIYTGTRGYLDSLEIEQVNKFLDELRKHLKDTKPQFQEIISSSKTFTEQAEILLKEAIQEQLERFSLQ 504          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ANEMR (ATP synthase subunit alpha, plastid OS=Aneura mirabilis GN=atpA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.368e-26
Identity = 58/76 (76.32%), Postives = 64/76 (84.21%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            QNQLA GQRLRELLKQ+Q+ PL VEEQ+ TI+TG NGY D LE GQV+KFLV+LR YL TNKPQF EII STKIFT
Sbjct:  408 QNQLARGQRLRELLKQSQSAPLGVEEQVATIHTGVNGYSDILETGQVKKFLVQLREYLPTNKPQFAEIIRSTKIFT 483          
The following BLAST results are available for this feature:
BLAST of DR403275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ATPA_SACHY5.795e-2764.00ATP synthase subunit alpha, chloroplastic OS=Sacch... [more]
ATPA_MAIZE5.795e-2764.00ATP synthase subunit alpha, chloroplastic OS=Zea m... [more]
ATPA_CYCTA7.569e-2765.66ATP synthase subunit alpha, chloroplastic OS=Cycas... [more]
ATPA_PSINU9.885e-2762.63ATP synthase subunit alpha, chloroplastic OS=Psilo... [more]
ATPA_LOLPR2.876e-2663.00ATP synthase subunit alpha, chloroplastic OS=Loliu... [more]
ATPA_CUSGR2.876e-2661.00ATP synthase subunit alpha, plastid OS=Cuscuta gro... [more]
ATPA_AGRST2.876e-2664.65ATP synthase subunit alpha, chloroplastic OS=Agros... [more]
ATPA_WHEAT4.906e-2665.31ATP synthase subunit alpha, chloroplastic OS=Triti... [more]
ATPA_HORVU4.906e-2665.31ATP synthase subunit alpha, chloroplastic OS=Horde... [more]
ATPA_ANEMR8.368e-2676.32ATP synthase subunit alpha, plastid OS=Aneura mira... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403275 ID=DR403275; Name=DR403275; organism=Citrus sinensis; type=EST; length=379bp
GGGCTCAGAACCAATTGGCAATGGGTCAACGCTTACGTGAGTTGCTCAAA
CAGGCCCAAGCANNNCCTCTCACGGTGGAAGAACAGATAATGACTATTTA
TACAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAA
AATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTC
CAAGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCT
TTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAAC
AATTCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAC
AAAAAAAAAAAAAAAAAAAGAAAAAAAAA
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