DR403275

Overview
NameDR403275
Unique NameDR403275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1849..2227. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ANGEV (ATP synthase subunit alpha, chloroplastic OS=Angiopteris evecta GN=atpA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.180e-25
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL VEEQ+ TIYTG NG+ D L++ QV++FLV+LR Y+ TNKPQF EII STK+FT                 FLLQE+
Sbjct:  410 QNQLARGQRLRELLKQSQSAPLAVEEQVATIYTGVNGFSDKLKVEQVKRFLVQLREYITTNKPQFGEIIRSTKMFTEQAENILKEAIEEHIELFLLQEK 508          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ADICA (ATP synthase subunit alpha, chloroplastic OS=Adiantum capillus-veneris GN=atpA PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.180e-25
Identity = 58/99 (58.59%), Postives = 70/99 (70.71%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL VEEQ+ TIYTG NGYLD L++ QV++FLV+LR Y+ T+KP F EII STK+FT                 FLLQE+
Sbjct:  409 QNQLARGQRLRELLKQSQSAPLAVEEQVATIYTGVNGYLDVLDVEQVKRFLVQLREYVATSKPSFGEIIRSTKVFTEQAEALLKEAIKESTELFLLQER 507          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_ZYGCR (ATP synthase subunit alpha, chloroplastic OS=Zygnema circumcarinatum GN=atpA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.153e-25
Identity = 58/98 (59.18%), Postives = 68/98 (69.39%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 299
            QNQLA GQRLRELLKQAQ+ PL+VE+Q+ TI+TG NGYLD +E+ QVR FL +LR Y+ TNKPQF EII STK FT                 FLLQ+
Sbjct:  408 QNQLARGQRLRELLKQAQSAPLSVEQQVATIFTGVNGYLDVIEVSQVRSFLTQLREYIITNKPQFGEIIRSTKTFTDEAQTILKQAIQEHTEAFLLQQ 505          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CUSOB (ATP synthase subunit alpha, plastid OS=Cuscuta obtusiflora GN=atpA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.424e-25
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 3
Query:    3 AQNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            +QN LA GQRLRELLKQ+Q+ PLT  EQIM+IY G NGYLDSLE+GQ+ KFL EL  YLK NKP+FQEII+STK FT
Sbjct:  407 SQNLLARGQRLRELLKQSQSAPLTTAEQIMSIYAGINGYLDSLELGQIGKFLRELSDYLKVNKPRFQEIINSTKTFT 483          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_STAPU (ATP synthase subunit alpha, chloroplastic OS=Staurastrum punctulatum GN=atpA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.084e-25
Identity = 59/99 (59.60%), Postives = 66/99 (66.67%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+QA PL VEEQ+ TIYTG NGYLD +E+ QVR+FL ELR YL TNKP+F EII   K  T                 FLLQE+
Sbjct:  408 QNQLARGQRLRELLKQSQAAPLAVEEQVATIYTGVNGYLDVIEVAQVRRFLTELRQYLGTNKPKFGEIIREKKAVTEEAESLLKAAIKEHTEAFLLQEE 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CHAGL (ATP synthase subunit alpha, chloroplastic OS=Chaetosphaeridium globosum GN=atpA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.208e-24
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 302
            QNQLA GQRLRELLKQ+Q+ PL VE+Q+ TIYTG NGYLD L +GQVR+FLV+LR Y+ +NK +F EI+ STK FT                 FL QE+
Sbjct:  408 QNQLARGQRLRELLKQSQSSPLAVEDQVATIYTGVNGYLDILSVGQVRRFLVQLREYIASNKSEFTEIVKSTKTFTDKAEKILKEALQEYTELFLAQEE 506          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_PINTH (ATP synthase subunit alpha, chloroplastic OS=Pinus thunbergii GN=atpA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.061e-24
Identity = 58/76 (76.32%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            Q+QLA GQRLRELLKQ+Q+ PLTVEEQI TIYTGTNGYLD  EI QVRKFL+ LR YL  NKPQF EII ST  FT
Sbjct:  408 QDQLARGQRLRELLKQSQSAPLTVEEQIATIYTGTNGYLDIFEIAQVRKFLLGLRFYLIKNKPQFGEIIRSTGTFT 483          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_PINKO (ATP synthase subunit alpha, chloroplastic OS=Pinus koraiensis GN=atpA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.692e-24
Identity = 58/76 (76.32%), Postives = 61/76 (80.26%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            Q+QLA GQRLRELLKQ+Q+ PL VEEQI TIYTGTNGYLD LEI QVR FLV LR YL  NKPQF EII ST  FT
Sbjct:  408 QDQLARGQRLRELLKQSQSAPLKVEEQIATIYTGTNGYLDILEIAQVRNFLVRLREYLIKNKPQFGEIICSTGTFT 483          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_CHAVU (ATP synthase subunit alpha, chloroplastic OS=Chara vulgaris GN=atpA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.997e-24
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            QNQLA GQRLRELLKQAQ+ PL+VEEQ+ TIYTG NGYLD LE  QVRKFL E R YL +NK +F EI+ STK FT
Sbjct:  411 QNQLARGQRLRELLKQAQSSPLSVEEQVATIYTGINGYLDKLETQQVRKFLTEFRIYLSSNKLEFIEILKSTKTFT 486          
BLAST of DR403275 vs. ExPASy Swiss-Prot
Match: ATPA_GNEPA (ATP synthase subunit alpha, chloroplastic OS=Gnetum parvifolium GN=atpA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.976e-23
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    6 QNQLAMGQRLRELLKQAQAXPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT 233
            Q+QLA GQRLRE LKQ Q+ PLTVEEQI TI+TGTNGYLD  +I +V+KFL +LR YLK  KPQF EII +TKIFT
Sbjct:  409 QDQLARGQRLRESLKQPQSTPLTVEEQIATIFTGTNGYLDRFDIREVKKFLDQLREYLKKKKPQFGEIIRTTKIFT 484          
The following BLAST results are available for this feature:
BLAST of DR403275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ATPA_ANGEV3.180e-2558.59ATP synthase subunit alpha, chloroplastic OS=Angio... [more]
ATPA_ADICA3.180e-2558.59ATP synthase subunit alpha, chloroplastic OS=Adian... [more]
ATPA_ZYGCR4.153e-2559.18ATP synthase subunit alpha, chloroplastic OS=Zygne... [more]
ATPA_CUSOB5.424e-2572.73ATP synthase subunit alpha, plastid OS=Cuscuta obt... [more]
ATPA_STAPU7.084e-2559.60ATP synthase subunit alpha, chloroplastic OS=Staur... [more]
ATPA_CHAGL1.208e-2456.57ATP synthase subunit alpha, chloroplastic OS=Chaet... [more]
ATPA_PINTH2.061e-2476.32ATP synthase subunit alpha, chloroplastic OS=Pinus... [more]
ATPA_PINKO2.692e-2476.32ATP synthase subunit alpha, chloroplastic OS=Pinus... [more]
ATPA_CHAVU5.997e-2472.37ATP synthase subunit alpha, chloroplastic OS=Chara... [more]
ATPA_GNEPA2.976e-2371.05ATP synthase subunit alpha, chloroplastic OS=Gnetu... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403275 ID=DR403275; Name=DR403275; organism=Citrus sinensis; type=EST; length=379bp
GGGCTCAGAACCAATTGGCAATGGGTCAACGCTTACGTGAGTTGCTCAAA
CAGGCCCAAGCANNNCCTCTCACGGTGGAAGAACAGATAATGACTATTTA
TACAGGAACGAATGGTTATCTTGATTCATTAGAAATTGGTCAAGTAAGAA
AATTTCTCGTTGAGTTACGTACTTACTTAAAAACGAATAAACCTCAGTTC
CAAGAAATAATATCTTCTACCAAGATATTCACCGAAGAAGCAGAAGCCCT
TTTGCAAGAAGCTATTCAGGAACAAAAGGAACGTTTTCTACTTCAGGAAC
AATTCTAAATAAAAAACCACTCTTATTCTTACTTTATAATACTTAATAAC
AAAAAAAAAAAAAAAAAAAGAAAAAAAAA
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