DR403274

Overview
NameDR403274
Unique NameDR403274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8110 contig Csv1_Contig8110:50..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 5.917e-69
Identity = 116/185 (62.70%), Postives = 146/185 (78.92%), Query Frame = 3
Query:   96 EQEHPKNAFGWAAKDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV 650
            E+E    AFGWAA+D+SG LSPF FSRR TGE++V  KV +CGICHSDLH +KNEW ++IYP+VPGHEI+G V+E+G+KVSKF +GDKVGVGC+V SC +C+SC  D ENYC K I TY   +HDGTI YGGYSD +V DE + V+IP   PL + APLLCAGI++YSP++++GL  P  HVG+V
Sbjct:    7 EKEQSVEAFGWAARDSSGHLSPFVFSRRKTGEEEVRVKVLYCGICHSDLHCLKNEWHSSIYPLVPGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAIATYNGVHHDGTINYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIV 191          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 1.721e-68
Identity = 115/184 (62.50%), Postives = 144/184 (78.26%), Query Frame = 3
Query:   99 QEHPKNAFGWAAKDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV 650
            +EH K A GWAA+D SGVLSP++FSRRA  + DVT KV +CGICH+DLH++KN+WGN +YP+VPGHEIVGVVT VG+ V+KFK GD VGVG  VGSC +CDSC    ENYCP +++T   K + G  T GG+SD +V +EH+V+R+P G PLD  APLLCAG+TVYSP+  +GL+ PG HVGVV
Sbjct:   77 EEHGKAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHVVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGFFVGSCRTCDSCGKGYENYCPTMVITSNGKDYGGAATQGGFSDAIVVNEHYVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPGKHVGVV 260          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.457e-67
Identity = 119/181 (65.75%), Postives = 137/181 (75.69%), Query Frame = 3
Query:  108 PKNAFGWAAKDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV 650
            P  A G AA+D SG LSP   SRR+TG+ DV  K+ +CGICHSDLH IKNEW N  YP+VPGHEI GVVTE G  V+KFK GDKVGVGCMV SCHSCDSC   LEN+CP VI TY +   DGT+TYGGYS ++V  E FVVR PE  PLD  APLLCAGITVYSP++++GL+ P  HVGV+
Sbjct:    3 PTAAAGLAARDASGHLSPLTISRRSTGDDDVVIKILYCGICHSDLHSIKNEWKNATYPLVPGHEIAGVVTEAGKNVTKFKGGDKVGVGCMVNSCHSCDSCNQGLENHCPGVIFTYNSVDKDGTVTYGGYSSMVVVHERFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLNVPSKHVGVL 183          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.457e-67
Identity = 115/178 (64.61%), Postives = 139/178 (78.09%), Query Frame = 3
Query:  117 AFGWAAKDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDK-PGMHVGV 647
            AFGWAA D SGVLSPFHFSRR  GE DVT K+  CG+CHSDLH IKN WG + YPI+PGHEIVG+ T+VG  V+KFK GD+VGVG ++GSC SC+SC  DLENYCPKV+ TY ++  DGT   GGYSD++V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K  G  +GV
Sbjct:    7 AFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGV 184          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 2.748e-66
Identity = 115/179 (64.25%), Postives = 139/179 (77.65%), Query Frame = 3
Query:  117 AFGWAAKDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTI-TYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDK-PGMHVGV 647
            AFGWAA D SGVLSPFHFSRR  GE DVT K+  CG+CHSDLH IKN WG + YPI+PGHEIVG+ T+VG  V+KFK GD+VGVG ++GSC SC+SC  DLENYCPKV+ TY ++  DGT    GGYSD++V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K  G  +GV
Sbjct:    7 AFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGV 185          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.781e-65
Identity = 112/180 (62.22%), Postives = 139/180 (77.22%), Query Frame = 3
Query:  111 KNAFGWAAKDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV 650
            + A G AA+D+SG LSPF  SRR+TG+ DV  K+  CGICHSDLH IKNEW ++IYP+VPGHEI GVVTEVG  V++FK GD+VGVGCMV SC SC+SC    EN+CP+ + TY +   DGT+TYGGYS ++V  E FVV  PE  PLD  APLLCAGITVY+P++++GL+ PG HVGV+
Sbjct:   14 QQAVGLAARDSSGHLSPFAISRRSTGDDDVAIKILFCGICHSDLHCIKNEWKHSIYPLVPGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVL 193          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.327e-65
Identity = 110/177 (62.15%), Postives = 137/177 (77.40%), Query Frame = 3
Query:  117 AFGWAAKDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV 647
            AFGWAAKD SG LSPFHF+RR     DVT K+ +CG+CHSDLH +KN+WG T YP+VPGHEI G+VT+VGS V+KFK GD+VGVG +V SC  C+ C  DLE+YCPK + TY N  + GT T GGYSD +V  + FV++ P+  PLDA APLLCAGITVYSP+++YG+ +PG H+GV
Sbjct:    6 AFGWAAKDASGHLSPFHFTRRQNEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTY-NSPYKGTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGV 181          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.327e-65
Identity = 113/187 (60.43%), Postives = 141/187 (75.40%), Query Frame = 3
Query:   99 QEHPKNAFGWAAKDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHD---GTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV 650
            +EH K A GWAA+D SGVLSP++FSRRA  + DVT KV +CGICH+DLH++KN+WGN +YP+VPGHEIVGVVT VG+ V+KFK GD VGVG  V SC  C+ C    ENYC K++ T     HD   G  T GG+SD +V +EH+V+R+P G PLD+ APLLCAG+TVYSP+  +GL+ PG HVGVV
Sbjct:   77 EEHGKAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHIVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVASCRGCECCGNGYENYCAKMVTTCNGVDHDHGGGAATQGGFSDAIVVNEHYVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPGKHVGVV 263          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.851e-63
Identity = 110/178 (61.80%), Postives = 133/178 (74.72%), Query Frame = 3
Query:  117 AFGWAAKDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV 650
            A GWAA+DTSG LSPF F+RR   E DVT KV +CGICH+DLH+IKNEWGN +YP+VPGHEIVGVVT VG+ V+KFK GD VGVG  V SC +CDSC    ENYCP +++T     + G  T GG+SD+MV  + +VVR+P   P D  APLLCAG+TVYSP+  YGL+ PG H+GVV
Sbjct:    8 ALGWAARDTSGHLSPFSFTRRVQQEDDVTIKVLYCGICHTDLHIIKNEWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVDSCRACDSCGKGYENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPGKHLGVV 185          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.012e-60
Identity = 113/197 (57.36%), Postives = 135/197 (68.53%), Query Frame = 3
Query:   87 QAPEQEHPKNAFGWAAKDTSGVLSPFHFSRRATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCP-KVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGT--------PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV 650
            QAP  +H + A G AA D SG L+P   SRR TG+ DV  KV +CGICHSDLH IKNEW N +YP+V GHEI GVVTEVG  V++FK GD+VGVGCMV +C  C+SC    ENYC   V+ TY +   DGT TYGGYSD +V  + FVVR P           PLD+ APLLCAG+TVY+P+R +GL + G HVGVV
Sbjct:   13 QAPPPQHTRKAVGLAAHDDSGHLTPIRISRRKTGDDDVAIKVLYCGICHSDLHTIKNEWRNAVYPVVAGHEITGVVTEVGKNVARFKAGDEVGVGCMVNTCGGCESCRDGCENYCSGGVVFTYNSVDRDGTRTYGGYSDAVVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVV 209          
The following BLAST results are available for this feature:
BLAST of DR403274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
CADH6_ARATH5.917e-6962.70Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CAD8B_ORYSJ1.721e-6862.50Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
CADH5_ORYSJ1.457e-6765.75Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH3_ARATH1.457e-6764.61Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CADH2_ARATH2.748e-6664.25Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH3_ORYSJ1.781e-6562.22Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
MTDH1_STYHU2.327e-6562.15Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CAD8C_ORYSJ2.327e-6560.43Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CAD8D_ORYSJ4.851e-6361.80Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
CADH7_ORYSJ1.012e-6057.36Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G17 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403274 ID=DR403274; Name=DR403274; organism=Citrus sinensis; type=EST; length=652bp
GGGGATCGCAACTTGTTTGTTTAATGCCCTGGACGTCAACGTAAGCCAAC
AAACACCGATATNATTAAATTCATTCTGAAATGGGGCAAGCACCGGAGCA
AGAGCACCCTAAGAACGCCTTTGGATGGGCTGCCAAGGACACTTCTGGCG
TTCTCTCCCCCTTTCACTTCTCCAGAAGAGCAACGGGAGAGAAGGATGTG
ACATTCAAAGTAACTCACTGTGGGATATGCCATTCAGATCTTCACATGAT
AAAAAATGAATGGGGCAATACCATTTACCCAATCGTCCCCGGACATGAGA
TTGTGGGCGTAGTGACAGAGGTCGGAAGCAAAGTGAGTAAATTCAAAGTC
GGAGACAAAGTGGGAGTAGGATGCATGGTGGGATCATGCCACTCTTGTGA
TAGCTGCGCCATTGATCTTGAGAACTACTGCCCCAAAGTTATAATGACCT
ATGCCAACAAGTACCATGATGGAACCATCACATACGGAGGCTACTCTGAC
ATTATGGTTGCCGATGAGCACTTTGTGGTCCGTATTCCTGAAGGCACACC
ACTTGACGCCACTGCCCCTCTCCTCTGTGCTGGTATCACAGTCTACAGTC
CGTTGAGATTCTATGGACTCGACAAGCCTGGTATGCATGTGGGTGTTGTC
GG
back to top