DR403274

Overview
NameDR403274
Unique NameDR403274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8110 contig Csv1_Contig8110:50..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.300e-11
Identity = 45/160 (28.12%), Postives = 70/160 (43.75%), Query Frame = 3
Query:  192 KDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITY-------------GGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPG 632
            K+V  K+   GIC +D H+IK    +  +P++ GHE  G+V  +G  V+  K GDKV +   +  C  C++C     N C +  +T      DGT  +               +++  V DE  V +I +  P +    + C   T Y      G  KPG
Sbjct:   35 KEVRIKILATGICRTDDHVIKGTMVSK-FPVIVGHEATGIVESIGEGVTTVKPGDKV-IPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPG 192          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADH_SULTO (NAD-dependent alcohol dehydrogenase OS=Sulfolobus tokodaii GN=adh PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11
Identity = 48/150 (32.00%), Postives = 72/150 (48.00%), Query Frame = 3
Query:  198 VTFKVTHCGICHSDLHMIKNEWGN--------TIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLD 623
            V  K+   G+CHSD+HM +  +GN           P+  GHEI G + EVG +V  +  GD V V    G   +C  C I  E+ C        N  +DG   Y  Y  ++V    ++ ++   + ++A APL C+G+T Y  +R   LD
Sbjct:   28 VLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGRIEEVGDEVVGYSKGDLVAVNPWEGE-GNCYYCRIGEEHLCDSPRWLGIN--YDG--AYAEY--VLVPHYKYLYKLRRLSAVEA-APLTCSGVTTYRAVRKASLD 169          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11
Identity = 48/148 (32.43%), Postives = 67/148 (45.27%), Query Frame = 3
Query:  195 DVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPK-VIMTYANKYHDGT--ITY-----------GGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVY 596
            +V  K+   GIC SD H++        +PI+ GHE  GVV  VG  V+  K GDKV +   +  C  C+SC     N C K  +  +    +DGT   TY           G +++  VA E  VV+I    PL+    + C   T Y
Sbjct:   35 EVRIKILASGICRSDDHVLSGAL-KVNFPIILGHEAAGVVESVGEGVTSMKPGDKV-IPIFLPQCGECNSCRHPRGNVCKKSELGPFTGLLYDGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGY 180          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADH_SULSO (NAD-dependent alcohol dehydrogenase OS=Sulfolobus solfataricus GN=adh PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 50/150 (33.33%), Postives = 70/150 (46.67%), Query Frame = 3
Query:  198 VTFKVTHCGICHSDLHMIKNEWGN--------TIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLD 623
            V  KV   G+CHSD+HM +  +GN           P+  GHEI G + EVG +V  +  GD V V    G   +C  C I  E+ C        N   DG   Y  Y  ++V    ++ ++     ++A APL C+GIT Y  +R   LD
Sbjct:   28 VLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGE-GNCYYCRIGEEHLCDSPRWLGIN--FDG--AYAEY--VIVPHYKYMYKLRRLNAVEA-APLTCSGITTYRAVRKASLD 169          
The following BLAST results are available for this feature:
BLAST of DR403274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
ADH7_HUMAN3.300e-1128.13Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH_SULTO5.628e-1132.00NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
ADH1B_UROHA5.628e-1132.43Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH_SULSO9.601e-1133.33NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G17 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403274 ID=DR403274; Name=DR403274; organism=Citrus sinensis; type=EST; length=652bp
GGGGATCGCAACTTGTTTGTTTAATGCCCTGGACGTCAACGTAAGCCAAC
AAACACCGATATNATTAAATTCATTCTGAAATGGGGCAAGCACCGGAGCA
AGAGCACCCTAAGAACGCCTTTGGATGGGCTGCCAAGGACACTTCTGGCG
TTCTCTCCCCCTTTCACTTCTCCAGAAGAGCAACGGGAGAGAAGGATGTG
ACATTCAAAGTAACTCACTGTGGGATATGCCATTCAGATCTTCACATGAT
AAAAAATGAATGGGGCAATACCATTTACCCAATCGTCCCCGGACATGAGA
TTGTGGGCGTAGTGACAGAGGTCGGAAGCAAAGTGAGTAAATTCAAAGTC
GGAGACAAAGTGGGAGTAGGATGCATGGTGGGATCATGCCACTCTTGTGA
TAGCTGCGCCATTGATCTTGAGAACTACTGCCCCAAAGTTATAATGACCT
ATGCCAACAAGTACCATGATGGAACCATCACATACGGAGGCTACTCTGAC
ATTATGGTTGCCGATGAGCACTTTGTGGTCCGTATTCCTGAAGGCACACC
ACTTGACGCCACTGCCCCTCTCCTCTGTGCTGGTATCACAGTCTACAGTC
CGTTGAGATTCTATGGACTCGACAAGCCTGGTATGCATGTGGGTGTTGTC
GG
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