DR403274

Overview
NameDR403274
Unique NameDR403274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8110 contig Csv1_Contig8110:50..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADH_STAA3 (Alcohol dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=adh PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.997e-16
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  177 RATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV 647
            RA    +   +  +CG+CH+DLH+   ++G+ +  +  GHE +G V EV   V   K+GD+V +  M  SC  C+ C    E  C  V        + G    G  ++ ++    + V++PE     A + + CAG+T Y  ++   + KPG  +GV
Sbjct:   20 RALKPGEALVQTEYCGVCHTDLHVKNADFGD-VTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSV-------KNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNV-KPGQWLGV 167          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADH1_CAEEL (Alcohol dehydrogenase 1 OS=Caenorhabditis elegans GN=sodh-1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.811e-16
Identity = 49/141 (34.75%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  189 EKDVTFKVTHCGICHSDLHMIKNEWGN-TIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLR 608
            + ++  K+ + GICHSDLH+   +  + ++ P+V GHE  G V ++G  V+ +++GDK GV  M  +C +C+ C    E  C  +     N   D + T+  Y  I   D     +I + T L A AP+LCAG+TVY  L+
Sbjct:   33 DDEILVKIEYSGICHSDLHVWLGDLKDMSVCPLVGGHEGAGSVVQIGKNVTGWQLGDKAGVKLMNFNCLNCEFCKKGHEPLCHHI----QNYGFDRSGTFQEYLTIRGVD---AAKINKDTNLAAAAPILCAGVTVYKALK 166          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADHA_MYCTU (Probable alcohol dehydrogenase adhA OS=Mycobacterium tuberculosis GN=adhA PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.691e-15
Identity = 48/134 (35.82%), Postives = 65/134 (48.51%), Query Frame = 3
Query:  219 CGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVS-----KFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPL 605
            CG+C +DLH+ + +       ++PGHE+VG V EVGS V      +F  GD+VG+  +  +C  C  C    EN CP+   T       G    GGY++       F   +P G      APLLCAGI  Y  L
Sbjct:   48 CGVCRTDLHVTEGDLPVHRERVIPGHEVVGEVIEVGSAVGAAAGGEFDRGDRVGIAWLRHTCGVCKYCRRGSENLCPQSRYT-------GWDADGGYAEFTTVPAAFAHHLPSGYSDSELAPLLCAGIIGYRSL 174          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADHP_ECOLI (Alcohol dehydrogenase, propanol-preferring OS=Escherichia coli (strain K12) GN=adhP PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.208e-15
Identity = 44/157 (28.03%), Postives = 76/157 (48.41%), Query Frame = 3
Query:  177 RATGEKDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV 647
            R+    +   K+  CG+CH+DLH+   ++G+    ++ GHE +GVV EVG  V+  K GD+  V      C  C+ C    E  C  V        + G    GG ++  +    + V++P+G    A + + CAG+T Y  ++   + +PG  + +
Sbjct:   20 RSLKHGEALLKMECCGVCHTDLHVKNGDFGDKT-GVILGHEGIGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNSGNETLCRSV-------KNAGYSVDGGMAEECIVVADYAVKVPDGLDSAAASSITCAGVTTYKAVKLSKI-RPGQWIAI 167          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADH1_ZYMMO (Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=adhA PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.103e-14
Identity = 40/151 (26.49%), Postives = 73/151 (48.34%), Query Frame = 3
Query:  195 DVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV 647
            +   ++ +CG+CH+DLH+   ++G+    I  GHE +G+V +VG  V+  KVGD+  V      C  C+ C    E  C        N  + G    G  ++  +    + V++P+G      + + CAG+T Y  ++   + +PG  + +
Sbjct:   26 EALLEMEYCGVCHTDLHVKNGDFGDETGRIT-GHEGIGIVKQVGEGVTSLKVGDRASVAWFFKGCGHCEYCVSGNETLC-------RNVENAGYTVDGAMAEECIVVADYSVKVPDGLDPAVASSITCAGVTTYKAVKVSQI-QPGQWLAI 167          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADH_SULAC (NAD-dependent alcohol dehydrogenase OS=Sulfolobus acidocaldarius GN=adh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 51/153 (33.33%), Postives = 70/153 (45.75%), Query Frame = 3
Query:  186 GEKDVTFKVTHCGICHSDLHMIKNEWGNTI------YPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSD-IMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLD 623
            G   V  KV + G+CH+DL +      N I       P+V GHEI G V E+G  V  FK  DKV +   +G   SC  C I  + YC        N    G    GGY + ++V D  ++ ++         +PL C+G+T Y  LR   LD
Sbjct:   24 GVGQVLVKVDYAGVCHTDLSVRSGAIFNRISSSKPTLPLVIGHEIAGEVVELGGNVEGFKKSDKVLIDPWIGD-GSCHYCKIGEDQYCD-------NPKWLGINVNGGYGEYVLVPDYRYMFKL-RNLSTSTASPLACSGVTAYRALRLANLD 167          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: BDH1_YEAST ((R,R)-butanediol dehydrogenase OS=Saccharomyces cerevisiae GN=BDH1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 53/152 (34.87%), Postives = 76/152 (50.00%), Query Frame = 3
Query:  189 EKDVTFKVTHCGICHSDLH--------MIKN----EWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSC-------HS-------CDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATA 566
            + +V   V+ CGIC SDLH        M K+    +  N   P+  GHE+ G+V++VG KV+K KVGD V V     SC       HS       CD+C    EN C     T+A     G I+ GG+++ +V  +H ++ +P+  PLD  A
Sbjct:   26 DDEVIIDVSWCGICGSDLHEYLDGPIFMPKDGECHKLSNAALPLAMGHEMSGIVSKVGPKVTKVKVGDHVVVDA-ASSCADLHCWPHSKFYNSKPCDACQRGSENLC-----THAGFVGLGVIS-GGFAEQVVVSQHHIIPVPKEIPLDVAA 170          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 52/160 (32.50%), Postives = 70/160 (43.75%), Query Frame = 3
Query:  195 DVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPK--------VIM------TYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRFYGLDKPG 632
            +V  K+   GIC SD H+I     +  +P++ GHE  GVV  VG  V+KFK GDKV +   V  C  C  C     N C K        V++      T   K     I+   +++  V DE  V +I E  PL+    + C   T Y      G  KPG
Sbjct:   35 EVRVKIVATGICRSDDHVISGALSDMKFPVILGHEAAGVVESVGEGVTKFKPGDKV-IPLFVPQCGECRCCKNPESNLCYKNDIGKYDGVLLDKTSRFTCKGKSIHNFISTSTFTEYTVLDEIAVAKIHEDAPLEKVCLIGCGFSTGYGSAVNTGKVKPG 193          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.285e-12
Identity = 43/148 (29.05%), Postives = 69/148 (46.62%), Query Frame = 3
Query:  192 KDVTFKVTHCGICHSDLHMIKNEWGNTIYPIVPGHEIVGVVTEVGSKVSKFKVGDKVGVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGT-------------ITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVY 596
            K+V  K+   G+C +D+  +  +  +   P++ GHE VG+V  VG  VS  + GDKV + C +  C  C +C     N C ++ ++  +   +GT             I  G +S+  V  E  V +I EG PL+    + C   T Y
Sbjct:   35 KEVRIKMVATGVCGTDIKHLDTQELSKFCPMIMGHEGVGIVESVGEGVSSVRTGDKVILLC-IPQCGECKTCLNSKNNICTEIRLSKTHLASEGTSRITCKGKLVHQYIALGSFSEYTVLKEISVAKIDEGAPLEKVCIIGCGFATGY 181          
BLAST of DR403274 vs. ExPASy Swiss-Prot
Match: TDH_MARMS (L-threonine 3-dehydrogenase OS=Marinomonas sp. (strain MWYL1) GN=tdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.481e-11
Identity = 47/146 (32.19%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  186 GEKDVTFKVTHCGICHSDLHMIK-NEWG-NTI-YPIVPGHEIVGVVTEVGSKVSKFKVGDKV-GVGCMVGSCHSCDSCAIDLENYCPKVIMTYANKYHDGTITYGGYSDIMVADEHFVVRIPEGTPLDATAPLLCAGITVYSPLRF 611
            G  DV  K++   IC +D+H+ + ++W  NTI  P+  GHE VGV+TEVG +VS FK+GD+V G G +  +C  C +C     + C K +    N+        G +++ +V       +IP     D  A     G   ++ L F
Sbjct:   24 GHNDVVIKISKTAICGTDMHIYQWDDWAQNTIPVPMTVGHEFVGVITEVGPEVSGFKIGDRVSGEGHI--TCGHCRNCRAGRRHLCRKTLGVGVNR-------TGAFAEYLVIPASNAFKIPNNISDDMAAIFDPFGNATHTALSF 160          
The following BLAST results are available for this feature:
BLAST of DR403274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
ADH_STAA31.997e-1629.30Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH1_CAEEL5.811e-1634.75Alcohol dehydrogenase 1 OS=Caenorhabditis elegans ... [more]
ADHA_MYCTU1.691e-1535.82Probable alcohol dehydrogenase adhA OS=Mycobacteri... [more]
ADHP_ECOLI2.208e-1528.03Alcohol dehydrogenase, propanol-preferring OS=Esch... [more]
ADH1_ZYMMO7.103e-1426.49Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=ad... [more]
ADH_SULAC2.699e-1333.33NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
BDH1_YEAST7.854e-1334.87(R,R)-butanediol dehydrogenase OS=Saccharomyces ce... [more]
ADH1_RANPE1.026e-1232.50Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
ADH6_RAT2.285e-1229.05Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
TDH_MARMS1.481e-1132.19L-threonine 3-dehydrogenase OS=Marinomonas sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G17 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403274 ID=DR403274; Name=DR403274; organism=Citrus sinensis; type=EST; length=652bp
GGGGATCGCAACTTGTTTGTTTAATGCCCTGGACGTCAACGTAAGCCAAC
AAACACCGATATNATTAAATTCATTCTGAAATGGGGCAAGCACCGGAGCA
AGAGCACCCTAAGAACGCCTTTGGATGGGCTGCCAAGGACACTTCTGGCG
TTCTCTCCCCCTTTCACTTCTCCAGAAGAGCAACGGGAGAGAAGGATGTG
ACATTCAAAGTAACTCACTGTGGGATATGCCATTCAGATCTTCACATGAT
AAAAAATGAATGGGGCAATACCATTTACCCAATCGTCCCCGGACATGAGA
TTGTGGGCGTAGTGACAGAGGTCGGAAGCAAAGTGAGTAAATTCAAAGTC
GGAGACAAAGTGGGAGTAGGATGCATGGTGGGATCATGCCACTCTTGTGA
TAGCTGCGCCATTGATCTTGAGAACTACTGCCCCAAAGTTATAATGACCT
ATGCCAACAAGTACCATGATGGAACCATCACATACGGAGGCTACTCTGAC
ATTATGGTTGCCGATGAGCACTTTGTGGTCCGTATTCCTGAAGGCACACC
ACTTGACGCCACTGCCCCTCTCCTCTGTGCTGGTATCACAGTCTACAGTC
CGTTGAGATTCTATGGACTCGACAAGCCTGGTATGCATGTGGGTGTTGTC
GG
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