DR403269

Overview
NameDR403269
Unique NameDR403269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1283 contig Csv1_Contig1283:120..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 68/133 (51.13%), Postives = 80/133 (60.15%), Query Frame = 3
Query:   81 MSLIPSIFGNRSVFDPFSSDVWA---PLG---SSSNEVSTFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKE--DKND-KWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            MSL+ S  GN  V DP S D WA   P G   S +       + +VD KET  AHVF ADLPG+          DG VL ISGER+ E++   KND +WH VER  GKF RRFRLP  A++DQV ASM+NGVL
Sbjct:    1 MSLVRS--GN--VLDPMSVDFWADADPFGAVRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVL 129          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 61/136 (44.85%), Postives = 77/136 (56.62%), Query Frame = 3
Query:   75 AKMSLIPSIFGNRSVF---------DPFSSDVWAPLGSSSNEVS-TFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            AK SL+P I    ++          DPF      P G   +E S T + A+VD KET E HV   D+PGL          + RVL++SGER  E++ K D WHRVER  GKF R+F+LP+N  +D VKA MENGVL
Sbjct:   26 AKASLLPFIDSPNTLLSDLWSDRFPDPFRVLEQIPYGVEKHEPSITLSHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVL 161          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 56/111 (50.45%), Postives = 67/111 (60.36%), Query Frame = 3
Query:  123 DPFSSDVWAPLGSSSNEVSTFAS-AQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            DPF      P G   +E S   S A+VD KET E HV   D+PGL          + RVL++SGER  E+E K D WHRVER  GKF R+FRLP+N  +D VKA +ENGVL
Sbjct:   43 DPFRVLEHIPFGVDKDEASMAMSPARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVL 153          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  123 DPFSSDVWAPLGSSSNEVSTFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            DPF      PLG   +     + A+VD KET E H    D+PGL          +  VL++SGER  E+E K D+WHRVER  GKF R+F+LP+N  ++ VKA +ENGVL
Sbjct:   48 DPFKILERIPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVL 157          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 47/74 (63.51%), Postives = 55/74 (74.32%), Query Frame = 3
Query:  294 VLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 515
            +LQISGER+VEKEDKND WHRVER  GKF+R FRLP+NAK+DQVKASMENGVL               +I+I+G
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = 3
Query:   75 AKMSLIPSIFGNRSVFDPFSSDVWAPLGSSSNEVSTFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGER----SVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            A+   +P + G  +  DPF      P G   ++V+  + A+VD +ET +AH    D+PG+          D RVL+ISGER    + E++   D WHR ER  G+F R+ RLP+NA +D + AS++NGVL
Sbjct:   38 ARDEAVPEL-GLLAAADPFRILEHVPFGFDRDDVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVL 166          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  186 ASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            ++A +D KET  AHVF AD+PG+          + +VL+ISG+R+   E+K ++WHRVER   +FVR  RLP NA  D V A+++NGVL
Sbjct:   68 STASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVL 156          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 3
Query:  117 VFDPFSSDVWAPL---GSS-------SNEVSTFASAQVDRKETREAHVFKADLP-GLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            +FD  + D W P    G++       +++ S FA+  ++ +ET EA+VF+ADLP G+          +G VL I+GERSV +E+K  + H +ER    F  RF LP++A +D V+ASM+ G+L
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGML 128          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  186 ASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVER-----GRGKFVRRFRLPENAKIDQVKASMENGVL 452
            ++A +D  E+  +H+FK ++PG           +G VL I GE   E++ +N  WH  ER     G  +F+RR  LPEN K+DQVKA +ENGVL
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVL 113          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 50/139 (35.97%), Postives = 76/139 (54.68%), Query Frame = 3
Query:   84 SLIPSIFGNRSVFDPFSSDVWAPL--------GSSSNEVSTFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDG-RVLQISGER-----SVEKEDKND--KWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            +L+P  +G   + DPF     +PL         +++ E +  A A+ D KET EAHV   D+PG+          +  RVL++SGER     + E+E + D  +WHR ER  G+F RRFR+P  A + +V A +++GVL
Sbjct:   29 ALVPYGYGYM-LDDPFRVLEQSPLRPAGGVAAAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVL 166          
The following BLAST results are available for this feature:
BLAST of DR403269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HS166_ORYSJ9.780e-2351.1316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_PEA1.668e-2244.8522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP41_SOYBN4.854e-2250.4522.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP22_ARATH4.543e-2045.4522.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN1.012e-1963.51Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS232_ORYSJ5.553e-1838.4623.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ1.047e-1647.1918.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ1.368e-1638.2117.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS157_ARATH5.379e-1341.4915.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HS219_ORYSJ9.175e-1335.9721.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G09 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403269 ID=DR403269; Name=DR403269; organism=Citrus sinensis; type=EST; length=708bp
GGGGAGTAAAGAGTGAAGACCCAATTGATAAATAAGCAAACGCTTTCGAA
GAAAGTGCTCGTCGCTTTGATTAAGCAAAAATGTCTTTGATTCCATCTAT
ATTCGGAAACAGGAGCGTGTTCGACCCATTTTCCTCGGACGTCTGGGCGC
CCCTTGGCTCCTCCAGCAACGAGGTGTCAACATTCGCCAGTGCTCAAGTC
GATCGGAAAGAAACCCGGGAAGCTCATGTTTTCAAGGCGGATCTTCCGGG
GCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAGGACGGGAGAGTCCTTC
AGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGACAAGAACGACAAATGG
CACCGTGTTGAGAGGGGCCGCGGCAAGTTCGTGAGGAGGTTCCGGTTGCC
TGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGGAGAATGGTGTCC
TCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAAGCCTGAGGTCAAATCC
ATTCAGATCACTGGTTGAAACTCTCCGTTAATTGCAGCCTTTTTAATTTG
GTTCTTGTTTTGTTCTGTGTGTTAATGAACGATGTGCGATTGCTGTTAAG
TGTGTCGCATACTTTTGTTCATGTAATGTGTTGTCGACTGCTTTTTTAAG
TAATAAAAATATGTTGTTTTCTTGATCCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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