DR403269

Overview
NameDR403269
Unique NameDR403269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1283 contig Csv1_Contig1283:120..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  171 EVSTFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            +    A+   D KE   A+ F  D+PGL          D RVL +SGER  E+ + + K+ R+ER  GKF+R+F LP+NA +D+V A   +GVL
Sbjct:   48 DARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVL 141          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  150 PLGSSSNEVSTFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKND--KWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            P+ +   +    A+   D KE   ++VF AD+PG+          D  VL +SGER+  ++D+ D  K+ R+ER  GKF+R+F LPENA ++ + A  ++GVL
Sbjct:   42 PIRAYVRDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVL 144          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 3
Query:  147 APLGSSSNEVSTFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            AP      +    A+   D KE   ++VF  D+PGL          +  VL ISGER  E+E +  K+ R+ER  GKF+R+F LPENA  D + A  ++GVL
Sbjct:   31 APSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVL 132          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  123 DPFSSDVWAPLGSSSNEVSTFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            D    ++ AP  +   +    A+   D KE   ++VF  D+PG+          D  VL ISGER  E+E +  K+ ++ER  GK +R+F LPENA I+ + A  ++GVL
Sbjct:   20 DTTEKNLNAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVL 129          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 3
Query:  147 APLGSSSNEVSTFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            AP  S   +    A+   D KE   ++VF+ D+PGL          D  +L I GER  ++E +  K+ R+ER  GK +R+F LPENA  D + A  ++GVL
Sbjct:   35 APTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVL 136          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  171 EVSTFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            +    A+   D KE   A+ F  D+PGL          D RVL ISGER  E E ++ K+ R+ER  GKF+R+F LP+NA +D+V A   +GVL
Sbjct:   39 DARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRRE-EREDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVL 131          
BLAST of DR403269 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  177 STFASAQVDRKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISG---ERSVEKEDKNDK---WHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 452
            S  A+A +D  ET  +HV + ++PGL          DG VL + G     + EKE + +K   WH  ERGR +F R   LP   +++Q++AS++NGVL
Sbjct:   25 SASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVL 122          
The following BLAST results are available for this feature:
BLAST of DR403269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HSP22_MAIZE4.553e-1240.4317.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP22_IPONI4.553e-1236.8918.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_SOLPE4.553e-1239.2217.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_PEA1.325e-1135.4517.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_SOYBN1.730e-1137.2517.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP23_MAIZE3.855e-1142.5517.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP16_ORYSJ5.034e-1137.7616.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244G09 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403269 ID=DR403269; Name=DR403269; organism=Citrus sinensis; type=EST; length=708bp
GGGGAGTAAAGAGTGAAGACCCAATTGATAAATAAGCAAACGCTTTCGAA
GAAAGTGCTCGTCGCTTTGATTAAGCAAAAATGTCTTTGATTCCATCTAT
ATTCGGAAACAGGAGCGTGTTCGACCCATTTTCCTCGGACGTCTGGGCGC
CCCTTGGCTCCTCCAGCAACGAGGTGTCAACATTCGCCAGTGCTCAAGTC
GATCGGAAAGAAACCCGGGAAGCTCATGTTTTCAAGGCGGATCTTCCGGG
GCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAGGACGGGAGAGTCCTTC
AGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGACAAGAACGACAAATGG
CACCGTGTTGAGAGGGGCCGCGGCAAGTTCGTGAGGAGGTTCCGGTTGCC
TGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGGAGAATGGTGTCC
TCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAAGCCTGAGGTCAAATCC
ATTCAGATCACTGGTTGAAACTCTCCGTTAATTGCAGCCTTTTTAATTTG
GTTCTTGTTTTGTTCTGTGTGTTAATGAACGATGTGCGATTGCTGTTAAG
TGTGTCGCATACTTTTGTTCATGTAATGTGTTGTCGACTGCTTTTTTAAG
TAATAAAAATATGTTGTTTTCTTGATCCAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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