DR403261

Overview
NameDR403261
Unique NameDR403261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_DROME (60S ribosomal protein L31 OS=Drosophila melanogaster GN=RpL31 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.823e-17
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            +R+H   FKK+AP+AIKEIRKFA++ MGTTDVR+D +LNK +WS                  ND+ED+  + Y+ VT   +P    K L T+ ++  D
Sbjct:   28 KRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTY--VPVSTFKNLQTENVESSD 123          

HSP 2 Score: 24.2534 bits (51), Expect = 6.823e-17
Identity = 13/23 (56.52%), Postives = 14/23 (60.87%), Query Frame = 3
Query:  120 TMVEKAGKGRKEEVVTREYTINL 188
            T  EK  K    EVVTRE TI+L
Sbjct:    4 TKGEKINKSAINEVVTRECTIHL 26          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_SPOFR (60S ribosomal protein L31 OS=Spodoptera frugiperda GN=RpL31 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVID 475
            +RLHG  FKK+AP+AIKEIRKFA+K MGT DVRVD +LNK +WS                  ND+ED+  + ++LVT   +P   +KGL T+ +D
Sbjct:   28 KRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_HELVI (60S ribosomal protein L31 OS=Heliothis virescens GN=RpL31 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVID 475
            +RLHG  FKK+AP+AIKEIRKFA+K MGT DVRVD +LNK +WS                  ND+ED+  + ++LVT   +P   +KGL T+ +D
Sbjct:   28 KRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 120          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_ICTPU (60S ribosomal protein L31 OS=Ictalurus punctatus GN=rpl31 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 478
            +R+HG +FKK+AP+AIKEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    KGL T  +DE
Sbjct:   31 KRIHGISFKKRAPRAIKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGVRNVPYRMRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTYKGLQTVNVDE 124          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_PAROL (60S ribosomal protein L31 OS=Paralichthys olivaceus GN=rpl31 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 478
            +R+HG  FKK+AP+AIKEIRKFA K MGT DVR+D +LNK VWS                  N++ED+  + Y+LVT   +P    KGL T  +DE
Sbjct:   30 KRIHGVGFKKRAPRAIKEIRKFAVKEMGTPDVRIDTRLNKAVWSKGVRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTCKGLQTVNVDE 123          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_AEDAE (60S ribosomal protein L31 OS=Aedes aegypti GN=RpL31 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.591e-15
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            +RLH   +KK+AP+A+K +RKFA+K MGT DVR+D +LNK +W                   ND+ED+  + Y+LVT   +P    K L T+ ++  +
Sbjct:   28 RRLHKVGYKKRAPRAVKIVRKFAEKEMGTNDVRIDTRLNKALWHRGIRNPPFRIRVRLSRRRNDDEDSPNKLYTLVTY--VPVSTFKELQTENVESTE 123          

HSP 2 Score: 28.8758 bits (63), Expect = 1.591e-15
Identity = 15/26 (57.69%), Postives = 16/26 (61.54%), Query Frame = 3
Query:  114 ATTMVEKAGKGRKEEVVTREYTINLH 191
            A T  EK  K    EVVTRE TINL+
Sbjct:    2 AKTKTEKKAKSAINEVVTRECTINLN 27          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_RAT (60S ribosomal protein L31 OS=Rattus norvegicus GN=Rpl31 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 478
            +R+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   31 KRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_PIG (60S ribosomal protein L31 OS=Sus scrofa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 478
            +R+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   31 KRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_MOUSE (60S ribosomal protein L31 OS=Mus musculus GN=Rpl31 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 478
            +R+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   31 KRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_MARMO (60S ribosomal protein L31 OS=Marmota monax GN=RPL31 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 478
            +R+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   31 KRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
The following BLAST results are available for this feature:
BLAST of DR403261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL31_DROME6.823e-1741.8460S ribosomal protein L31 OS=Drosophila melanogast... [more]
RL31_SPOFR7.690e-1747.3760S ribosomal protein L31 OS=Spodoptera frugiperda... [more]
RL31_HELVI7.690e-1747.3760S ribosomal protein L31 OS=Heliothis virescens G... [more]
RL31_ICTPU1.713e-1645.8360S ribosomal protein L31 OS=Ictalurus punctatus G... [more]
RL31_PAROL2.922e-1646.8860S ribosomal protein L31 OS=Paralichthys olivaceu... [more]
RL31_AEDAE1.591e-1537.7660S ribosomal protein L31 OS=Aedes aegypti GN=RpL3... [more]
RL31_RAT2.474e-1543.7560S ribosomal protein L31 OS=Rattus norvegicus GN=... [more]
RL31_PIG2.474e-1543.7560S ribosomal protein L31 OS=Sus scrofa GN=RPL31 P... [more]
RL31_MOUSE2.474e-1543.7560S ribosomal protein L31 OS=Mus musculus GN=Rpl31... [more]
RL31_MARMO2.474e-1543.7560S ribosomal protein L31 OS=Marmota monax GN=RPL3... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244F22 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244F22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403261 ID=DR403261; Name=DR403261; organism=Citrus sinensis; type=EST; length=691bp
GGGGATTTTTGTGAAAAGAGAAACCCCCTATATTTATTGCTGTGGCGCTC
TAGGGTTTTGTTTTAGCAGCCGCAGACGCAGAGTGTAGAAGCTCGAGAGC
AGAAAAAGAAGAAGCAACAACAATGGTGGAGAAAGCTGGTAAAGGAAGAA
AAGAAGAGGTCGTCACTCGCGAATATACCATTAATCTCCACAACGCTTGC
ATGGCTGCACCTTCAAGAAGAAAGCTCCAAAAGCCATAAAGGAAATTAGG
AAGTTTGCTCAAAAAGCCATGGGGACAACTGATGTTAGGGTGGATGTGAA
GCTCAACAAGCAAGTGTGGAGCCGTGGTATCCGTAGTGTACCAAGGAGAA
TTCGTGTTCGTGTTGCACGGAAGAGAAACGATGAGGAAGATGCCAAAGAA
GAGTTCTACTCTCTCGTCACTGTTGCCGAGATCCCTCCAGAAGGACTCAA
GGGGTTGGGCACCAAGGTCATTGATGAGGAAGATTGAAGCAACCTTTCTG
TTTAGCTAAGGAACTCCAAATTTTGGCTATAATTTTATCTTATTCAGTTG
CTTTTTTGGTTTTGGATTTACTTTTTAGAACTGCCTTGGGCCAAAAAAGG
TTTCGTGAACGTATTGTGATTTATGCATTTACCCTGTTTAAGATTTCTGA
TACTTCATTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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