DR403261

Overview
NameDR403261
Unique NameDR403261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6080 contig Csv1_Contig6080:1..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_HUMAN (60S ribosomal protein L31 OS=Homo sapiens GN=RPL31 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 478
            +R+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   31 KRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_BOVIN (60S ribosomal protein L31 OS=Bos taurus GN=RPL31 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 478
            +R+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +DE
Sbjct:   31 KRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVDE 124          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_DROVI (60S ribosomal protein L31 OS=Drosophila virilis GN=RpL31 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.678e-15
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVW----SXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            +R+H   FKK+AP+AIKEIRKF ++ MGT DVR+D +LNK +W    S                  ND+ED+  + Y+LVT   +P    K L T+ ++  D
Sbjct:   28 KRVHNIGFKKRAPRAIKEIRKFTEREMGTNDVRIDTRLNKHIWSKGISLRYRSTPFRVRVRLARRRNDDEDSPNKLYTLVTYVPVPT--FKNLQTENVESSD 127          

HSP 2 Score: 25.409 bits (54), Expect = 2.678e-15
Identity = 14/25 (56.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:  114 ATTMVEKAGKGRKEEVVTREYTINL 188
            A T  EK  K    EVVTRE TI+L
Sbjct:    2 AKTKGEKRNKSAINEVVTRECTIHL 26          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_PONAB (60S ribosomal protein L31 OS=Pongo abelii GN=RPL31 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVID 475
            +R+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                  N++ED+  + Y+LVT   +P    K L T  +D
Sbjct:   31 KRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVD 123          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_DICDI (60S ribosomal protein L31 OS=Dictyostelium discoideum GN=rpl31 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVI 472
            +RL+G TFK +APKA+K+++ FAQK MGT DVR+D KLNK +WS                  N++E+A E+ Y++ ++  +  +  KGL TK +
Sbjct:   17 KRLYGTTFKDRAPKAVKQVKLFAQKIMGTKDVRIDNKLNKFLWSQGIKNVPHRVRVTLSRKRNEDENATEKLYTVASLVIV--KSFKGLQTKKV 108          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_ASHGO (60S ribosomal protein L31 OS=Ashbya gossypii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            +RLHG TFKK+AP+A+KEI+KFA+  MGT DVR+D +LN ++W                   N+E+ A    +S V    +     KGL T V++EE+
Sbjct:   18 KRLHGVTFKKRAPRAVKEIKKFAKLHMGTEDVRLDPRLNTEIWKRGVKGVPFRMRLRISRRRNEEDTAPPPLFSYVEPVVV--ASAKGLHTVVVEEEE 113          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_CANGA (60S ribosomal protein L31 OS=Candida glabrata GN=RPL31 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 481
            +RLHG +FKK+APKA+KEI+KFA+  MGT DVR+  +LN+++W                   N+EE+AK   +S V    +     KGL T V++E+
Sbjct:   18 KRLHGVSFKKRAPKAVKEIKKFAKLHMGTEDVRLAPELNQEIWKRGVKGVAFRLRLRISRKRNEEENAKNPLFSYVEPVFV--ASAKGLQTTVVEED 112          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31B_YEAST (60S ribosomal protein L31-B OS=Saccharomyces cerevisiae GN=RPL31B PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 481
            +RLHG +FKK+AP+A+KEI+KFA+  MGT DVR+  +LN+ +W                   N+EEDAK   +S V    +     KGL T V++E+
Sbjct:   18 KRLHGVSFKKRAPRAVKEIKKFAKLHMGTEDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLV--ASAKGLQTVVVEED 112          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31A_YEAST (60S ribosomal protein L31-A OS=Saccharomyces cerevisiae GN=RPL31A PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 39/97 (40.21%), Postives = 56/97 (57.73%), Query Frame = 2
Query:  191 QRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 481
            +RLHG +FKK+AP+A+KEI+KFA+  MGT DVR+  +LN+ +W                   N+EEDAK   +S V    +     KGL T V++E+
Sbjct:   18 KRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLV--ASAKGLQTVVVEED 112          
BLAST of DR403261 vs. ExPASy Swiss-Prot
Match: RL31_CAEEL (60S ribosomal protein L31 OS=Caenorhabditis elegans GN=rpl-31 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = 2
Query:  194 RLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 484
            R+ G   KK+AP+AI EI+KFA+  M T DVRVD KLNK +WS                  N++ED+ ++ Y+L T   +P     GL    +D E+
Sbjct:   28 RIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTY--VPCTNFHGLTNVNVDSEE 122          
The following BLAST results are available for this feature:
BLAST of DR403261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL31_HUMAN2.474e-1543.7560S ribosomal protein L31 OS=Homo sapiens GN=RPL31... [more]
RL31_BOVIN2.474e-1543.7560S ribosomal protein L31 OS=Bos taurus GN=RPL31 P... [more]
RL31_DROVI2.678e-1539.2260S ribosomal protein L31 OS=Drosophila virilis GN... [more]
RL31_PONAB9.400e-1543.1660S ribosomal protein L31 OS=Pongo abelii GN=RPL31... [more]
RL31_DICDI2.315e-1340.4360S ribosomal protein L31 OS=Dictyostelium discoid... [more]
RL31_ASHGO3.950e-1339.8060S ribosomal protein L31 OS=Ashbya gossypii GN=RP... [more]
RL31_CANGA5.158e-1340.2160S ribosomal protein L31 OS=Candida glabrata GN=R... [more]
RL31B_YEAST8.799e-1340.2160S ribosomal protein L31-B OS=Saccharomyces cerev... [more]
RL31A_YEAST8.799e-1340.2160S ribosomal protein L31-A OS=Saccharomyces cerev... [more]
RL31_CAEEL8.235e-1138.1460S ribosomal protein L31 OS=Caenorhabditis elegan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244F22 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244F22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403261 ID=DR403261; Name=DR403261; organism=Citrus sinensis; type=EST; length=691bp
GGGGATTTTTGTGAAAAGAGAAACCCCCTATATTTATTGCTGTGGCGCTC
TAGGGTTTTGTTTTAGCAGCCGCAGACGCAGAGTGTAGAAGCTCGAGAGC
AGAAAAAGAAGAAGCAACAACAATGGTGGAGAAAGCTGGTAAAGGAAGAA
AAGAAGAGGTCGTCACTCGCGAATATACCATTAATCTCCACAACGCTTGC
ATGGCTGCACCTTCAAGAAGAAAGCTCCAAAAGCCATAAAGGAAATTAGG
AAGTTTGCTCAAAAAGCCATGGGGACAACTGATGTTAGGGTGGATGTGAA
GCTCAACAAGCAAGTGTGGAGCCGTGGTATCCGTAGTGTACCAAGGAGAA
TTCGTGTTCGTGTTGCACGGAAGAGAAACGATGAGGAAGATGCCAAAGAA
GAGTTCTACTCTCTCGTCACTGTTGCCGAGATCCCTCCAGAAGGACTCAA
GGGGTTGGGCACCAAGGTCATTGATGAGGAAGATTGAAGCAACCTTTCTG
TTTAGCTAAGGAACTCCAAATTTTGGCTATAATTTTATCTTATTCAGTTG
CTTTTTTGGTTTTGGATTTACTTTTTAGAACTGCCTTGGGCCAAAAAAGG
TTTCGTGAACGTATTGTGATTTATGCATTTACCCTGTTTAAGATTTCTGA
TACTTCATTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top