DR403254

Overview
NameDR403254
Unique NameDR403254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403254 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 48/140 (34.29%), Postives = 70/140 (50.00%), Query Frame = 1
Query:   55 LLINCILWLVFTLVWVMALSFVSRGRHKQLPPGPRPYPVIGNLLELGAK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQ 471
            LL+   L   F  V V  L    RG+  +LPPGP P PV GN L++G    H++L  LAK  G I  LR+GQ   VVVSSP ++K +L    + F  R     ++   F      + +      W+ +R+I  +  FT++
Sbjct:    4 LLLEKTLLGSFVAVLVAILVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLSKEVLHTQGVEFGSR--TRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of DR403254 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 47/140 (33.57%), Postives = 71/140 (50.71%), Query Frame = 1
Query:   55 LLINCILWLVFTLVWVMALSFVSRGRHKQLPPGPRPYPVIGNLLELGAK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQ 471
            LLI   L  +F  +    L    RG+  +LPPGP P P+ GN L++G    H++L  LAK  G I+ LR+GQ   VVVSSP +AK +L    + F  R     ++   F      + +      W+ +R+I  +  FT++
Sbjct:    4 LLIEKTLVALFAAIIGAILISKLRGKKFKLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSR--TRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of DR403254 vs. ExPASy Swiss-Prot
Match: C71AK_ARATH (Cytochrome P450 71A20 OS=Arabidopsis thaliana GN=CYP71A20 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 45/154 (29.22%), Postives = 82/154 (53.25%), Query Frame = 1
Query:   88 TLVWVMALSFVSRGRHKQ--LPPGPRPYPVIGNLLELGAKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDR---MVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIKDLLAHVE 534
            TL+ ++  S + R   K   LPP P   PVIGNL +L    H+SL  L+  +GP+M L  G+   ++VSS  +A  +++ HDL   +R    V + ILS         +A+ P    W+ ++ I   ++  ++ + + +++R ++IK ++  +E
Sbjct:   12 TLLALLLKSILKRTATKNFNLPPSPWRLPVIGNLHQLSLHTHRSLRSLSLRYGPLMLLHFGRTPVLIVSSADVAHDVMKTHDLVCANRPKTKVVDKILS-----GGRDVAFAPYGEYWRQMKSICIQNLLNNKMVRSYEKIREEEIKRMIEKLE 160          
BLAST of DR403254 vs. ExPASy Swiss-Prot
Match: C71AJ_ARATH (Cytochrome P450 71A19 OS=Arabidopsis thaliana GN=CYP71A19 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 44/175 (25.14%), Postives = 91/175 (52.00%), Query Frame = 1
Query:   55 LLINCILWLVFTLVWVMALSFVSRGRHKQLPPGPRPYPVIGNLLELGAKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIKDLLAHVED--NCRAGKAIDVGQ 573
            +L+   L  +  L+ + ++   +   +  LPP P   PVIGNL +L    H+SL  L+  +GP+M L  G+   ++VSS  +A  IL+ +D+   +R   + I  +     +  +A+ P    WK ++ I   ++ +++ + + +++R  +IK ++  VE+  +C     +++ Q
Sbjct:    4 ILVTLCLTTLLALLLLKSILKRTTTNNLNLPPSPWRLPVIGNLHQLSLNTHRSLRSLSLRYGPLMLLHFGRTPVLIVSSADVAHDILKTYDVICANRPKTKVIDKILRGGRD--VAFAPYGEYWKQMKSICIQNLLSNKMVRSYKKIREDEIKLMIEKVENASSCSPPSPVNLSQ 176          
BLAST of DR403254 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 46/147 (31.29%), Postives = 73/147 (49.66%), Query Frame = 1
Query:   55 LLINCILWLVFTLVWVMALSFVSRGRHKQLPPGPRPYPVIGNLLELGAK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQE 492
            LL+   L  VF  V +  +    RG+  +LPPGP P P+ GN L++G    H++L   AK  G +  LR+GQ   VVVSSP + K +L    + F  R     ++   F      + +      W+ +R+I  +  FT++ +  N+E
Sbjct:    4 LLLEKSLIAVFVAVILATVISKLRGKKLKLPPGPIPIPIFGNWLQVGDDLNHRNLVDYAKKFGDLFLLRMGQRNLVVVSSPDLTKEVLLTQGVEFGSR--TRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNRE 148          
BLAST of DR403254 vs. ExPASy Swiss-Prot
Match: C516B_DICDI (Probable cytochrome P450 516B1 OS=Dictyostelium discoideum GN=cyp516b1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 57/224 (25.45%), Postives = 107/224 (47.77%), Query Frame = 1
Query:   73 LWLVFTLVWVMALSFVSRGRHKQLPPGPRPYPVIGNLLELGAKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIKDLLAHVEDNCRAGKAIDVGQAAFNTSLNLLSNTIFSIDL-VNPNEREFRDTVSGILEE---AGKPNLSDHFPLLKKF 732
            ++L+ +L+  +A     + R   +PPGP P P+IGNL +LG  P+KSL   +  +G + ++ LG V TV++S P++ + I+  ++ S  DR + ++ L +    +          + W   RKI +  +  ++K +    + ++ I  L  +      + +AI+        SLN + +  FS  +    +        + I+EE    G P+  D+ P LK F
Sbjct:    1 MYLILSLIIFLAYVAFHKKRTNGMPPGPFPLPIIGNLHQLGKSPYKSLKSFSDKYGGLTTIFLGSVPTVLISEPNILREIIIKNNDSIIDRYISDSGLIIGGERN----LLFSKGSFWIKYRKIFSSAMTNARKFNIASRIEQQAI-SLNNYFGTYANSKQAINPHDYIRRYSLNGVIDYSFSDSVEYESDTHHIVIRAAEIMEEILATGNPH--DYLPFLKPF 217          
BLAST of DR403254 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 46/140 (32.86%), Postives = 72/140 (51.43%), Query Frame = 1
Query:   55 LLINCILWLVFTLVWVMALSFVSRGRHKQLPPGPRPYPVIGNLLELGAK-PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQ 471
            LL+   L  +F  + V ++    RG+  +LPPGP P PV GN L++G    H++L+  AK  G I  LR+GQ   VVVSSP +AK +L    + F  R     ++   F      + +      W+ +R+I  +  FT++
Sbjct:    4 LLLEKTLLGLFAAIIVASIVSKLRGKKFKLPPGPIPVPVFGNWLQVGDDLNHRNLSDYAKKFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSR--TRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of DR403254 vs. ExPASy Swiss-Prot
Match: C82A3_SOYBN (Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 54/252 (21.43%), Postives = 111/252 (44.05%), Query Frame = 1
Query:   49 MDLLINCILWLVFTLVWVMALSFV------SRGRHKQLPPGPRPYPVIGNLLELGAK--PHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIK-------DLLAHVEDNCRAGKAIDVGQAAFNTSLNLLSNTI-----FSIDLVNPNER--EFRDTVSGILEEAGKPNLSDHFPLLKKFDL 738
            MDLL+NC+      +  +++L F+         R K  P     +P++G+L  L     PHK L  LA  +GP+ +++LG    +V+S+  M+K +   +DL+   R  P+ +      +++  +   P    W+ LRKI      ++++++    +R  +++       D+ ++   N      +D+ Q     + N++   +     F +  V   ++   F   +   +   G   ++D  P L+  DL
Sbjct:    1 MDLLLNCLNLNTIAIASILSLIFLCLFLYRKNSRGKDAPVVSGAWPILGHLSLLNGSQTPHKVLGALADKYGPLFTIKLGMKPALVLSNWEMSKELFTTNDLAVSSR--PKLVAVEVMSYNQAFVGLAPYGPYWRELRKIVTFEFLSNRRIEQRNHIRVSEVRTSIKELFDIWSNGNKNESRYTLVDIKQWLAYLTFNMVVRMVVGKRYFGVMHVEGKDKAQRFMKNIREFMNLMGTFTVADGVPCLRWLDL 250          
BLAST of DR403254 vs. ExPASy Swiss-Prot
Match: C71C2_MAIZE (Cytochrome P450 71C2 OS=Zea mays GN=CYP71C2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 60/232 (25.86%), Postives = 109/232 (46.98%), Query Frame = 1
Query:   55 LLINCILWLVFTLVWVMALSFVSRGRHKQ-----LPPGPR-PYPVIGNLLELGAKPHKSLAKLAKIHGP--IMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIKDLLAHVEDNCRAG--KAIDVGQAAFNTSLNLLSNTIFSIDLVNP-NEREFRDTVSGILEEAGKPNLSDHFP 717
            LL+  +++LV  LV        S  + KQ     LPP P    P+IG+L  +GA+ H S+  L   HG   ++ LR+G V T+ VSSPS A A+L+  D  F  R  P  + +    +    +A++P     +  RK+   H+ +++K+ + +  R+++++ ++  +     A    A+D+       + +++S  +      N    R F +     +      NL D+FP
Sbjct:   24 LLLGVLIFLVIRLVSARRTGTTSANKRKQQQRLPLPPWPPGKLPIIGHLHLIGAETHISIRDLDAKHGRNGLLLLRIGAVPTLFVSSPSAADAVLRTQDHIFASR--PPWMAAEIIRYGPSDVAFVPYGEYGRQGRKLLTTHMLSTKKVQSFRHGRQEEVRLVMDKIRAAATAAPPAAVDLSDLLSGYTNDVVSRAVLGASHRNQGRNRLFSELTEINVSLLAGFNLEDYFP 253          
BLAST of DR403254 vs. ExPASy Swiss-Prot
Match: C71BF_ARATH (Cytochrome P450 71B15 OS=Arabidopsis thaliana GN=CYP71B15 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 53/219 (24.20%), Postives = 106/219 (48.40%), Query Frame = 1
Query:   70 ILWLVFTLVWVMALSFVSRGRHKQLPPGPRPYPVIGNLLELGAKPHKSLAKLAKIHGPIMSLRLGQVTTVVVSSPSMAKAILQNHDLSFCDRMVPEAILSLPFPHHEFSLAWLPVSTMWKNLRKISNMHIFTSQKLDANQELRRKKIKDLLAHVEDNCRAGKAIDVGQAAFNTSLNLLSNTIFSIDLVNPNEREFRDTVSGILEEAG---KPNLSDHFP 717
            + +LV   + ++ L+ +   ++K LPPGP+  P+IGNL +      ++   LA+++GP+  L+ G V  V +SS   A+ +L+ +DL  C R  PEA       ++   +   P    W  +RK+S + +F+ +KL + + +  ++    +  + +       +++ +A F    N++    + I+L   +  E    V  +L+      +   SD FP
Sbjct:    5 LCFLVLLPLILIFLNVLKPSKYK-LPPGPKKLPIIGNLHQRRTLHPRNRRNLAEMYGPVALLQYGFVPVVAISSKEAAEEVLKINDLECCSR--PEAAGMRATFYNFKDIGMAPFGDEWSLMRKLSVVELFSVKKLQSFKYIIEEENNLCVKKLSEFATRQSPVNLERAIFTLVGNIVCRIGYGINLYECDFFEADRVVDLVLKAEAVIRETVFSDFFP 220          
The following BLAST results are available for this feature:
BLAST of DR403254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
TCMO_POPKI2.898e-1234.29Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
TCMO_HELTU2.898e-1233.57Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]
C71AK_ARATH2.898e-1229.22Cytochrome P450 71A20 OS=Arabidopsis thaliana GN=C... [more]
C71AJ_ARATH2.898e-1225.14Cytochrome P450 71A19 OS=Arabidopsis thaliana GN=C... [more]
TCMO_ARATH3.785e-1231.29Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
C516B_DICDI3.785e-1225.45Probable cytochrome P450 516B1 OS=Dictyostelium di... [more]
TCMO_CATRO4.943e-1232.86Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
C82A3_SOYBN8.432e-1221.43Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=... [more]
C71C2_MAIZE1.438e-1125.86Cytochrome P450 71C2 OS=Zea mays GN=CYP71C2 PE=2 S... [more]
C71BF_ARATH1.878e-1124.20Cytochrome P450 71B15 OS=Arabidopsis thaliana GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244F14 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244F14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403254 ID=DR403254; Name=DR403254; organism=Citrus sinensis; type=EST; length=741bp
GGGGAGTTTCAAATANNNAGAAATCAAAATATCAACNNNNATTCAAAGAT
GGATTTGTTAATTAACTGCATACTGTGGCTTGTATTCACATTGGTTTGGG
TGATGGCTTTAAGTTTCGTTTCCAGAGGACGACACAAACAGCTTCCACCG
GGACCGAGGCCTTATCCAGTGATCGGAAACCTTCTGGAGCTAGGTGCTAA
ACCTCACAAGTCACTGGCCAAGCTTGCCAAGATTCATGGGCCCATAATGA
GTCTAAGACTTGGCCAGGTGACCACAGTAGTGGTTTCTTCTCCAAGCATG
GCCAAAGCCATCCTTCAAAATCATGATTTATCATTCTGTGATCGAATGGT
CCCTGAAGCAATCTTGTCACTGCCCTTCCCGCACCATGAATTCAGTTTGG
CCTGGCTTCCAGTTTCAACAATGTGGAAAAATCTTCGAAAAATAAGCAAC
ATGCATATTTTCACTAGCCAGAAACTCGATGCCAATCAAGAGCTCCGGCG
CAAGAAAATCAAAGACCTTCTTGCTCATGTTGAAGACAATTGCCGTGCGG
GTAAAGCAATAGATGTTGGCCAAGCTGCTTTCAATACTTCACTTAATTTA
TTATCCAACACAATTTTTTCTATTGATTTGGTTAATCCCAATGAGCGAGA
GTTTAGGGATACAGTTTCTGGTATCTTGGAAGAAGCAGGAAAGCCTAACT
TGTCCGACCATTTTCCTCTTCTCAAAAAGTTTGATCTGCAG
back to top