DR403236

Overview
NameDR403236
Unique NameDR403236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:136..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC6_DEBHA (Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii GN=UBC6 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 37/116 (31.90%), Postives = 61/116 (52.59%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 410
            S+ + KR+ KE K +  +PP   SA P  +++  W   I GP  +PF  G +   + FP +YPFKPP ++  T   +     N  +CL   D   + W+PA +++ +L  + S +T
Sbjct:    3 SRQSQKRLTKEYKAITLNPPPYVSAKPNDENILEWHYVITGPPHTPFEEGQYHGILRFPSEYPFKPPSISMITP--NGRFACNTRLCLSMSDYHPDTWNPAWSVATILTGLLSFMT 116          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 35/116 (30.17%), Postives = 57/116 (49.14%), Query Frame = 3
Query:  174 WQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL--------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY 479
            W        DS +AG +    + FP  YP +PP + F +K+FHPNI  +G +C+ IL              K++W+P   I  +++SI  +L  PN   P   + + MY+ +  +Y
Sbjct:   68 WDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEY 183          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 3
Query:   84 SKRINKELKDLQKDPP--ASCSAGPVADD--MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDIL-------KEQWSPALTISKVLLSI 395
            +KRI KEL  +    P  AS S     D+  +   +  I GP D+P+A G+F   I FP  YPF PPK AF T       F+PN+ ++G ICL IL       +E+W+P  ++ +VL+SI
Sbjct:  411 TKRIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSI 530          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 39/113 (34.51%), Postives = 58/113 (51.33%), Query Frame = 3
Query:  195 PSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 512
            P +  + GG F   I  PP+Y   PP V   TKV+HPNIN +GSICL IL++       W P   ++ V+  + SL  D  + +D L  + A M+  +R  +    R +  +Y
Sbjct:   67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISRY 179          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UB2J2_MOUSE (Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus GN=Ube2j2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 32/117 (27.35%), Postives = 60/117 (51.28%), Query Frame = 3
Query:   81 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 422
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +P+ GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UB2J2_HUMAN (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 32/117 (27.35%), Postives = 60/117 (51.28%), Query Frame = 3
Query:   81 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 422
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +P+ GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UB2J2_BOVIN (Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus GN=UBE2J2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 32/117 (27.35%), Postives = 60/117 (51.28%), Query Frame = 3
Query:   81 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 422
            A++R+ ++   ++KDP     A P+  ++  W   + GP  +P+ GG +   + FP ++PFKPP +   T   +     N  +CL   D   + W+PA ++S +L  + S + +  P
Sbjct:   13 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 127          
The following BLAST results are available for this feature:
BLAST of DR403236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC6_DEBHA1.351e-1231.90Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces ... [more]
Y1A1_ENCCU3.932e-1230.17Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC17_CAEEL5.136e-1239.17Probable ubiquitin-conjugating enzyme protein 17 O... [more]
UBC12_CAEEL8.760e-1234.51NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UB2J2_MOUSE3.329e-1127.35Ubiquitin-conjugating enzyme E2 J2 OS=Mus musculus... [more]
UB2J2_HUMAN3.329e-1127.35Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens... [more]
UB2J2_BOVIN3.329e-1127.35Ubiquitin-conjugating enzyme E2 J2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244E12 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403236 ID=DR403236; Name=DR403236; organism=Citrus sinensis; type=EST; length=576bp
GGGGGACTTTGACTCGCAACTTTAAATAACACCAGACCCAAACTCTCAGG
CCACNANNTTTGTTGAGAAATTCCCAGATGGCTTCAAAACGGATCAACAA
GGAGTTGAAGGACCTACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGGCC
CTGTTGCTGATGACATGTTCCATTGGCAAGCAACAATTATGGGCCCATCA
GACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCCCACC
TGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACCAAGGTTTTCC
ACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAAGGAG
CAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTTGCTC
ACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATTGCTC
ACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATCCTGG
ACTCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTATGCCCCTGAG
AACATTAATGGCTTGTGGTCCTATTA
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