DR403235

Overview
NameDR403235
Unique NameDR403235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403235_ssr11 microsatellite DR403235_ssr11:11..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2998 contig Csv1_Contig2998:1061..1449. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.364e-25
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEN 385
            +KKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+
Sbjct:   46 KKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEH 98

HSP 2 Score: 61.6178 bits (148), Expect = 1.364e-25
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 3 
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            K  +K EHP E+R++E  +IR+KYPDR+PVIVEKA ++ I D+DKK
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKK 47
[Close]
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.364e-25
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEN 385
            +KKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+
Sbjct:   46 KKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEH 98

HSP 2 Score: 61.6178 bits (148), Expect = 1.364e-25
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 3 
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            K  +K EHP E+R++E  +IR+KYPDR+PVIVEKA ++ I D+DKK
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKK 47
[Close]
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.364e-25
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEN 385
            +KKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+
Sbjct:   46 KKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEH 98

HSP 2 Score: 61.6178 bits (148), Expect = 1.364e-25
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 3 
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            K  +K EHP E+R++E  +IR+KYPDR+PVIVEKA ++ I D+DKK
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKK 47
[Close]
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.364e-25
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEN 385
            +KKYLVP+DLTVGQF +++RKRI L AE A+F FV N++PPT+A M  +Y+E+
Sbjct:   46 KKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEH 98

HSP 2 Score: 61.6178 bits (148), Expect = 1.364e-25
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 3 
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            K  +K EHP E+R++E  +IR+KYPDR+PVIVEKA ++ I D+DKK
Sbjct:    2 KFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKK 47
[Close]
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.636e-25
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 2 
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENK 388
            ++KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N+
Sbjct:   46 KRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNR 99

HSP 2 Score: 60.8474 bits (146), Expect = 8.636e-25
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 3 
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKR 47
[Close]
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.463e-24
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEN 385
            ++KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N
Sbjct:   46 KRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN 98

HSP 2 Score: 60.8474 bits (146), Expect = 1.463e-24
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 3 
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKR 47
[Close]
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.463e-24
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEN 385
            ++KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N
Sbjct:   46 KRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN 98

HSP 2 Score: 60.8474 bits (146), Expect = 1.463e-24
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 3 
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKR 47
[Close]
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.463e-24
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEN 385
            ++KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N
Sbjct:   46 KRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN 98

HSP 2 Score: 60.8474 bits (146), Expect = 1.463e-24
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 3 
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKR 47
[Close]
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.463e-24
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEN 385
            ++KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N
Sbjct:   46 KRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN 98

HSP 2 Score: 60.8474 bits (146), Expect = 1.463e-24
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 3 
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKR 47
[Close]
BLAST of DR403235 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.463e-24
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  227 QKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEEN 385
            ++KYLVP+DLTVGQF +++RKRI L  E A+F FV N +PPT+A M  +YE+N
Sbjct:   46 KRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDN 98

HSP 2 Score: 60.8474 bits (146), Expect = 1.463e-24
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 3 
Query:   96 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKK 233
            K  +K +HP E R+ E  +IR+KYPDR+PVIVEKA ++ +PD+DK+
Sbjct:    2 KFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKR 47
The following BLAST results are available for this feature:
BLAST of DR403235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
GBRAP_RABIT1.364e-2560.38Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE1.364e-2560.38Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN1.364e-2560.38Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN1.364e-2560.38Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_PONAB8.636e-2557.41Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENTR1.463e-2458.49Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENLA1.463e-2458.49Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT1.463e-2458.49Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE1.463e-2458.49Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN1.463e-2458.49Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244E11 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403235 ID=DR403235; Name=DR403235; organism=Citrus sinensis; type=EST; length=388bp
GGGGAGTCTTTTTATTTATTTATTTATTTTAATCCGTCGATTCATATTCA
TTTTCCCCTTGGAAGCAGTAGAAAGAACAAGGAGAAGCTATGGCCAAGAG
CTCCTTCAAGCTTGAACACCCACTCGAAAGGAGGCAGGCTGAATCTGCCC
GTATCAGGGAGAAGTATCCTGATAGAATACCAGTGATTGTGGAGAAGGCT
GAAAGGAGTGACATACCTGATATTGACAAAAAAAATACCTGGTTCCTGCT
GATCTGACTGTTGGACAATTTGTTTATGTGGTCCGGAAGAGGATAAAGCT
CAGTGCTGAGAAGGCCATATTCATATTTGTCAAGAACATTTTGCCACCCA
CTGCTGCAATGATGTCTGCAATTTATGAGGAAAACAAA
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