DR403234

Overview
NameDR403234
Unique NameDR403234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6077 contig Csv1_Contig6077:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCNL3_HUMAN (DCN1-like protein 3 OS=Homo sapiens GN=DCUN1D3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.349e-27
Identity = 56/140 (40.00%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  307 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNSAFAWA--KEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFL 720
            + LEEL+ RYKD   D IL +G+   CNDL VDP +  +L+++W  +AATMC+F+++EF  G +++  DS+D    R   +  E K E KF+++Y   F +    E+GQ+SL  + AI +W+L+F +   P++D W  FL
Sbjct:   89 QRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLDQWLNFL 228          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCNL3_BOVIN (DCN1-like protein 3 OS=Bos taurus GN=DCUN1D3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.349e-27
Identity = 56/140 (40.00%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  307 RHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNSAFAWA--KEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFL 720
            + LEEL+ RYKD   D IL +G+   CNDL VDP +  +L+++W  +AATMC+F+++EF  G +++  DS+D    R   +  E K E KF+++Y   F +    E+GQ+SL  + AI +W+L+F +   P++D W  FL
Sbjct:   89 QRLEELFRRYKDEREDAILEEGMERFCNDLCVDPTEFRVLLLAWKFQAATMCKFTRKEFFDGCKAISADSIDGICARFPSLLTEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNNPPVLDQWLNFL 228          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCNL3_XENLA (DCN1-like protein 3 OS=Xenopus laevis GN=dcun1d3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.640e-26
Identity = 67/203 (33.00%), Postives = 113/203 (55.67%), Query Frame = 1
Query:  142 HKLSRSNRDKLQQFVSITG-ASEKAALQALKASDWHLEGAFDVFYSQPQSKS-------LTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNSAFAWA--KEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFL 720
            HK S S+++   + +SI G AS +  +   K  D  LE +  +       K        L+  + +EEL+ RYKD   D IL +G+   C+DL VDP +  +LV++W  +AATMC+F+++EF  G +S+  D ++    +   +  E K E KF+++Y   F +    E+GQ+SL  + AI +W+L+F + +  ++D W +FL
Sbjct:   28 HKRSSSHKE---EHMSICGKASGEILVNGTKKGDASLEASQPLAVGVDTKKKEQGVGAELSSLQRIEELFRRYKDEREDAILEEGMERFCDDLCVDPTEFRVLVLAWKFQAATMCKFTRREFFEGCKSINADGIESICSQFPGLLNEAKQEDKFKDLYRFTFQFGLDSEEGQRSLHREIAIALWKLVFTQNKPLILDQWLEFL 227          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCN1_CAEEL (Defective in cullin neddylation protein 1 OS=Caenorhabditis elegans GN=dcn-1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.130e-25
Identity = 68/212 (32.08%), Postives = 114/212 (53.77%), Query Frame = 1
Query:  139 MHKLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQ------SKSLTDTRHLEELYNRYKDPYLDM----ILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELK-DEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKA 741
            M++L    + KL+QFV  T  +E  +L  L  ++W++E A  +++  P        +   D  ++E L+N+Y DP   +    +   GI  L  DL  +  D  +LV++W   A T CEFS  E++ G+ +L  D++   R+RI  + + L+ D+ KF E+Y  AF +AK    ++L L+TAI  W +LF ++   ++  W  FL A+ N A
Sbjct:    1 MNRLKSDQKTKLRQFVQWTQVTEAVSLNFLAKANWNIEYAMTLYFDNPNLFAGSTPQPSVDRSNIERLFNQYVDPKDKVGEKRMGPHGINRLLTDLGYEATDRRVLVLAWKFTAQTQCEFSLDEWVKGMTALQADTVQNLRQRIDSINSGLESDKAKFHELYLFAFNYAKSAACRNLDLETAICCWDVLFGQRS-TIMTQWIDFLWAQENAA 211          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCN1_CAEBR (Defective in cullin neddylation protein 1 OS=Caenorhabditis briggsae GN=dcn-1 PE=3 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.441e-21
Identity = 63/199 (31.66%), Postives = 104/199 (52.26%), Query Frame = 1
Query:  172 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQ-----SKSLTDTRHLEELYNRY---KDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELK-DEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKA 741
            L+QFV  T A+E  +L  L  ++W++E A  ++Y  P      + +  D     +L+ +Y   +D   + I   G+  L  DL  +P D  +L+++W  KA T CEFS QEF  G+ SL +DS+   +++I  + A +K D  K R++    F + K    +SL L+ AI  W ++F  ++ PL+  W  FL  +   A
Sbjct:   87 LRQFVQWTQATEPVSLNFLAKANWNIEYAMTLYYDNPNLFSSSAPATVDQSKTIQLFTQYVDKRDGLGERIGPHGMQRLLIDLGYEPIDRRVLILAWVFKAETQCEFSLQEFTNGMASLQVDSIQGLKQKIDALDAGMKADLTKTRDLCIFTFNYGKSAASRSLDLEMAICYWDVIFGARK-PLMSQWIDFLYGQERMA 284          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCNL5_BOVIN (DCN1-like protein 5 OS=Bos taurus GN=DCUN1D5 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 57/179 (31.84%), Postives = 101/179 (56.42%), Query Frame = 1
Query:  208 KAALQALKASDWHLEGAFDVFY--SQPQSKSLTDTRHLEEL-----YNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQ 723
            K+ + A  A D  L+      Y  SQP ++ ++   H         +  Y  P  +++  +G+   C D+ V+P++I+MLV++W ++A +M  F+K+E++ G+ SL  D  +K + +  F+R++L D   F+ IY  AF +A++K Q+SL +DTA  M  LL   + WPL   + Q+L+
Sbjct:    8 KSGVAAAAAEDGGLKKCKISSYCRSQPPARLISGEEHFSSKKCLAWFYEYAGPD-EVVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQNKFDFLRSQLNDISSFKNIYRYAFDFARDKDQRSLDIDTAKSMLALLLG-RTWPLFSVFYQYLE 184          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCNL5_HUMAN (DCN1-like protein 5 OS=Homo sapiens GN=DCUN1D5 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 51/155 (32.90%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  274 SQPQSKSLTDTRHLEEL-----YNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQ 723
            SQP ++ ++   H         +  Y  P  +++  +G+   C D+ V+P++I+MLV++W ++A +M  F+K+E++ G+ SL  D  +K + +  F+R++L D   F+ IY  AF +A++K Q+SL +DTA  M  LL   + WPL   + Q+L+
Sbjct:   33 SQPPARLISGEEHFSSKKCLAWFYEYAGPD-EVVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQNKFDFLRSQLNDISSFKNIYRYAFDFARDKDQRSLDIDTAKSMLALLLG-RTWPLFSVFYQYLE 185          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCNL5_RAT (DCN1-like protein 5 OS=Rattus norvegicus GN=Dcun1d5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.489e-20
Identity = 46/119 (38.66%), Postives = 78/119 (65.55%), Query Frame = 1
Query:  367 DGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQ 723
            +G+   C D+ V+P++I+MLV++W ++A +M  F+K+E++ G+ SL  D  +K + R  F+R++L D   F+ IY  AF +A++K Q+SL +DTA  M  LL   + WPL   + Q+L+
Sbjct:   68 EGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQSRFDFLRSQLNDISSFKNIYRYAFDFARDKDQRSLDIDTAKSMLALLLG-RTWPLFSVFYQYLE 185          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCNL5_MOUSE (DCN1-like protein 5 OS=Mus musculus GN=Dcun1d5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.489e-20
Identity = 46/119 (38.66%), Postives = 78/119 (65.55%), Query Frame = 1
Query:  367 DGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQ 723
            +G+   C D+ V+P++I+MLV++W ++A +M  F+K+E++ G+ SL  D  +K + R  F+R++L D   F+ IY  AF +A++K Q+SL +DTA  M  LL   + WPL   + Q+L+
Sbjct:   68 EGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQSRFDFLRSQLNDISSFKNIYRYAFDFARDKDQRSLDIDTAKSMLALLLG-RTWPLFSVFYQYLE 185          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCNL4_DANRE (DCN1-like protein 4 OS=Danio rerio GN=dcun1d4 PE=4 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 1
Query:  352 DMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAI 744
            D++  +G+   C D+ V+P+++VMLV++W + A +M  F+ QE++ G+ SL  DS +K R  + ++R+ L D   F+ IY  AF +A+EK Q+SL L+TA  M  LL   K WPL   + QFL+    K I
Sbjct:  106 DVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQSMGYFTLQEWLKGMGSLQCDSTEKLRNSLDYLRSVLNDATSFKLIYRYAFDFAREKDQRSLDLNTAKCMLGLLLG-KTWPLFPVFNQFLEQSKYKVI 235          
The following BLAST results are available for this feature:
BLAST of DR403234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
DCNL3_HUMAN9.349e-2740.00DCN1-like protein 3 OS=Homo sapiens GN=DCUN1D3 PE=... [more]
DCNL3_BOVIN9.349e-2740.00DCN1-like protein 3 OS=Bos taurus GN=DCUN1D3 PE=2 ... [more]
DCNL3_XENLA4.640e-2633.00DCN1-like protein 3 OS=Xenopus laevis GN=dcun1d3 P... [more]
DCN1_CAEEL5.130e-2532.08Defective in cullin neddylation protein 1 OS=Caeno... [more]
DCN1_CAEBR3.441e-2131.66Defective in cullin neddylation protein 1 OS=Caeno... [more]
DCNL5_BOVIN2.913e-2031.84DCN1-like protein 5 OS=Bos taurus GN=DCUN1D5 PE=2 ... [more]
DCNL5_HUMAN3.804e-2032.90DCN1-like protein 5 OS=Homo sapiens GN=DCUN1D5 PE=... [more]
DCNL5_RAT6.489e-2038.66DCN1-like protein 5 OS=Rattus norvegicus GN=Dcun1d... [more]
DCNL5_MOUSE6.489e-2038.66DCN1-like protein 5 OS=Mus musculus GN=Dcun1d5 PE=... [more]
DCNL4_DANRE8.475e-2039.69DCN1-like protein 4 OS=Danio rerio GN=dcun1d4 PE=4... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244E10 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403234 ID=DR403234; Name=DR403234; organism=Citrus sinensis; type=EST; length=745bp
GGGGAGAGTGAAAATATAAAAATAAAAAATAAAAAAAGAAGGAGAGCCAA
AAGCCGAAGAAGCCCTAGAGTTCGTCTCGAGAGAGAGCTTTCTCATTCAT
CAGCATAAAACCAAATATCAAATTCACAAGCTCCCGAGATGCATAAGCTG
AGTAGAAGTAACCGGGACAAACTCCAACAATTTGTCTCGATAACTGGGGC
AAGCGAAAAAGCTGCTCTTCAGGCTTTGAAGGCTAGTGACTGGCATCTTG
AAGGAGCATTTGATGTATTCTATAGCCAACCTCAATCAAAATCACTAACT
GATACCAGACATTTGGAGGAGCTTTATAACAGATATAAAGATCCATATCT
TGATATGATTCTGGTTGACGGTATCACTCTCCTGTGCAATGACCTTCAGG
TGGATCCTCAAGATATAGTTATGTTAGTTGTTTCATGGCACATGAAAGCT
GCTACAATGTGTGAATTCTCAAAGCAGGAGTTCATAGGTGGGTTGCAATC
ACTAGGGATAGATTCTCTGGATAAGTTCCGTGAAAGGATATCATTCATGC
GGGCTGAGCTGAAAGATGAACAAAAATTCCGTGAGATATACAACTCTGCA
TTTGCCTGGGCAAAAGAAAAGGGTCAGAAATCTCTGGCATTGGACACTGC
AATCGGAATGTGGCAATTATTATTTGCTGAGAAGCAGTGGCCACTAGTTG
ATCATTGGTGCCAGTTCTTGCAGGCTAAGCATAATAAAGCAATCT
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