DR403234

Overview
NameDR403234
Unique NameDR403234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6077 contig Csv1_Contig6077:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCNL5_PONAB (DCN1-like protein 5 OS=Pongo abelii GN=DCUN1D5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.888e-19
Identity = 50/153 (32.68%), Postives = 90/153 (58.82%), Query Frame = 1
Query:  274 SQPQSKSLTDTRHLEEL-----YNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQF 717
            SQP ++ ++   H         +  Y  P  +++  +G+   C D+ V+P++I+MLV++W ++A +M  F+K+E++ G+ SL  D  +K + +  F+R++L D   F+ IY  AF +A++K Q+SL +DTA  M  LL   + WPL   + Q+
Sbjct:   33 SQPPARLISGEEHFSSKKCLAWFYEYAGPD-EVVGPEGMEKFCEDIGVEPENIIMLVLAWKLEAESMGFFTKEEWLKGMTSLQCDCTEKLQNKFDFLRSQLNDISSFKNIYRYAFDFARDKDQRSLDIDTAKSMLALLLG-RTWPLFSVFYQY 183          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCNL4_HUMAN (DCN1-like protein 4 OS=Homo sapiens GN=DCUN1D4 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.206e-19
Identity = 58/176 (32.95%), Postives = 96/176 (54.55%), Query Frame = 1
Query:  217 LQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAI 744
            L A K+    +   +D    + + ++ +  R LE  Y        D++  +G+   C D+ V+P+++VMLV++W + A  M  F+ QE++ G+ SL  D+ +K R  + ++R+ L D   F+ IY  AF +A+EK Q+SL ++TA  M  LL   K WPL   + QFL+    K I
Sbjct:   75 LSAKKSRHDSMYRKYDSTRIKTEEEAFSSKRCLEWFYEYAGTD--DVVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRNTLDYLRSFLNDSTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLG-KIWPLFPVFHQFLEQSKYKVI 247          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCNL4_MOUSE (DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.598e-18
Identity = 50/131 (38.17%), Postives = 79/131 (60.31%), Query Frame = 1
Query:  352 DMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELKDEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAI 744
            D +  +G+   C D+ V+P+++VMLV++W + A  M  F+ QE++ G+ SL  D+ +K R  + ++R+ L D   F+ IY  AF +A+EK Q+SL ++TA  M  LL   K WPL   + QFL+    K I
Sbjct:  118 DAVGPEGMEKFCEDIGVEPENVVMLVLAWKLDAQNMGYFTLQEWLKGMTSLQCDTTEKLRTTLDYLRSLLNDTTNFKLIYRYAFDFAREKDQRSLDINTAKCMLGLLLG-KIWPLFPVFHQFLEQSKYKVI 247          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCN1L_DICDI (DCN1-like protein 1 OS=Dictyostelium discoideum GN=DDB_G0290025 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.651e-18
Identity = 57/208 (27.40%), Postives = 104/208 (50.00%), Query Frame = 1
Query:  139 MHKLSRSNRDKLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQS-KSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMR-----AELKDEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAI 744
            M++L    + K  +F+SIT A+E  A+Q LK + W  + A D FYS P +  +  D + +E ++N+YKD   + I  + +     D+ ++  +++ L V W  K   M   +K EF+  ++ L  D++    +++  +R      +L +   F+E Y   F   K + QK+++L   I +W ++   K +  +  W  FL   H  AI
Sbjct:    1 MYRLPADQKLKCTEFMSITEATEAKAIQYLKDASWRTDAAVDNFYSNPSNFANKFDKKAIETIFNKYKDSGEEQI-SEKLPEFVKDININ-DEMMELAVLWKFKTKQMGVITKNEFMETMERLRCDNISSLEKQMETVRQQLSSKDLNNNSAFKEFYMFVFDLGKAENQKNVSLQMCIELWTIVLKSK-FDNLQIWFDFLNKHHKLAI 205          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCN1_CRYNE (Defective in cullin neddylation protein 1 OS=Cryptococcus neoformans GN=DCN1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.767e-17
Identity = 72/227 (31.72%), Postives = 110/227 (48.46%), Query Frame = 1
Query:  157 SNRDKL--QQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSL--TDTRHLEELYNRYKDPY-LDMILVDGITLLCNDLQVDP-QDIVMLVVSWHMKAATMCEFSKQEFIGGLQSL--GIDSLDKFRERISFMRAEL-KDEQKFREIYNSAFAWAKEKGQ---KSLALDTAIGMWQLLF-------------------AEKQWPLVDHWCQFLQAKHNKAI 744
            S +D L   QF +ITG S   A + +K    H+E A D FY+   +        R L E++ ++KDP    +I +DG   LC +L +DP  D V+  ++  + +    E+ K  F+ G+ S    IDSL K +  +  +R +L  D + F+++YN AF  A+   Q   +SL LDTAI +W L F                    +   P  D W +F+Q K NKA+
Sbjct:    9 STKDSLLVTQFRAITGTSSAEAAKYIKRYK-HIEAAVDAFYNNEPAPRADPAQERKLGEIWEKFKDPSDPKLIKIDGTMELCEELDIDPGTDAVLFCLAADLGSKATGEWEKAPFVAGIASYPGNIDSLPKLKAYLPTLRKKLVSDPEYFKKVYNHAFQLARGGPQSLTRSLPLDTAIDLWTLFFPPAFNHSPSALSHLPDNSPPQFTQPEFDLWIEFMQQK-NKAV 233          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCN1_USTMA (Defective in cullin neddylation protein 1 OS=Ustilago maydis GN=DCN1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.937e-17
Identity = 60/220 (27.27%), Postives = 108/220 (49.09%), Query Frame = 1
Query:  172 LQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQ-------SKSLTDTR-------HLEELYNRYKDPYLD---------------MILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGI-DSLDKFRERISFMRAELKDEQKFR-----------------------EIYNSAFAWAKEKGQKSLALDTAIGMWQLL 672
            L+QF  +T A+ + A + LKA  + +E A D F++  Q       S S  D +        L  L++R++D   D               +I + G   +C  L+V P+D+V L +S+++K+A+M  F+++ +I G + L + D++DK ++ +  +R EL D +  R                       ++Y   +A+A+ +GQKSLAL+ A+  W L+
Sbjct:   11 LRQFRQLTNATPQDANRILKAHGYRIEPATDAFFNNEQAQINASISSSTLDRKSEREVKERLNALFDRFRDAGADSDEEDDEASQPEDRDLISIGGALKMCEALEVSPEDVVFLPLSYYLKSASMGTFTREGYINGWKMLDLSDTIDKQKKTLEKLRQELLDNKPLRLERIAQEKSNPATASGANKGLYEKVYEYTYAFARREGQKSLALENALAFWDLV 230          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCN1_YARLI (Defective in cullin neddylation protein 1 OS=Yarrowia lipolytica GN=DCN1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.072e-14
Identity = 49/193 (25.39%), Postives = 101/193 (52.33%), Query Frame = 1
Query:  169 KLQQFVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPYLDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERI-SFMRAELKDEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAI 744
            ++++ ++ TG+ EK A  AL+  DW++E A D   + PQ     D     +++++Y++   D I +DG      DL +  ++  +L V+    + ++  F+++ F+ G  ++G D+L   ++   SF  +       F++IY   + +  ++GQ+ L  +TA+  W+LL   K +  +D W  F+  K+ + I
Sbjct:   10 EIRRVMTFTGSKEKTARDALEKFDWNVEVAIDHILNTPQ----VDLSGASKVFDKYRNADSDEIDLDGTIQYITDLGLSLEEPTVLAVAMTAGSPSVGTFTRKPFVEGWAAIGGDTLPAQQKLCRSFAESMTSLNADFQKIYKFTYGFLLQEGQRVLPQETAVDYWRLLLTGK-YEHLDKWLSFVTEKYKRNI 197          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCN1M_DICDI (DCN1-like protein 2 OS=Dictyostelium discoideum GN=DDB_G0272016 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.683e-13
Identity = 51/163 (31.29%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  271 YSQPQSKSLTDTRHLEELYNRYKDPYLD---MILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDKFRERISFMRAELK-DEQKFREIYNSAFAWAKE-KGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAKHNKAI 744
            + + + K++    H   LY    + +LD    I  +GI   C+D+ + P    +LV++W M A+ M  FSK EF  G + L    L   +++++    +LK D  KF ++Y  AF +A E + +KS+ L TA  M +LL  E   P   ++  FL  + NK+I
Sbjct:   62 FEKYKGKNIIKAIHYTYLYTYIFNVHLDDDETIGPEGIARFCSDIGLAPDSFEILVLAWTMNASKMGYFSKNEFSSGFEKLQCSDLSTLKKQLNSTSQKLKHDSTKFTDLYKYAFGFASEVESKKSVDLGTAAEMLKLLLPE--GPHTTNFAAFLCTQPNKSI 222          
BLAST of DR403234 vs. ExPASy Swiss-Prot
Match: DCN1_SCHPO (Defective in cullin neddylation protein 1 OS=Schizosaccharomyces pombe GN=dcn1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 52/186 (27.96%), Postives = 93/186 (50.00%), Query Frame = 1
Query:  181 FVSITGASEKAALQALKASDWHLEGAFDVFYSQPQSKSLTDTRHLEELYNRYKDPY-LDMILVDGITLLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFIGGLQSLGIDSLDK----FRERISFMRAELKDEQKFREIYNSAFAWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQ 723
            F   T  S KAAL  LK  ++  + A+  +  Q   +     + L  +++++      D+I +DG   L   L +  +D   L+VS+ +K+  M EF ++ F+ G  +L   SLD+     +E++   R+   D    + IY   +  A +KG+K+L+   AI  +Q+L  +  +PL+D W  FL+
Sbjct:   12 FSKATSTSSKAALSWLKKYNFDYDVAYTKWIQQKSREEAE--KQLNNVFSQFSSKEDKDLIELDGSVQLFTALDISLEDPETLLVSYFLKSPRMGEFHRESFVEGALNLSTTSLDQLKLAIKEKVQVWRS---DASLQKAIYIYTYPLACDKGKKTLSTSIAIEFFQILLKD-TFPLLDDWIAFLK 191          
The following BLAST results are available for this feature:
BLAST of DR403234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
DCNL5_PONAB1.888e-1932.68DCN1-like protein 5 OS=Pongo abelii GN=DCUN1D5 PE=... [more]
DCNL4_HUMAN4.206e-1932.95DCN1-like protein 4 OS=Homo sapiens GN=DCUN1D4 PE=... [more]
DCNL4_MOUSE1.598e-1838.17DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=... [more]
DCN1L_DICDI4.651e-1827.40DCN1-like protein 1 OS=Dictyostelium discoideum GN... [more]
DCN1_CRYNE1.767e-1731.72Defective in cullin neddylation protein 1 OS=Crypt... [more]
DCN1_USTMA3.937e-1727.27Defective in cullin neddylation protein 1 OS=Ustil... [more]
DCN1_YARLI1.072e-1425.39Defective in cullin neddylation protein 1 OS=Yarro... [more]
DCN1M_DICDI7.683e-1331.29DCN1-like protein 2 OS=Dictyostelium discoideum GN... [more]
DCN1_SCHPO8.495e-1227.96Defective in cullin neddylation protein 1 OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244E10 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403234 ID=DR403234; Name=DR403234; organism=Citrus sinensis; type=EST; length=745bp
GGGGAGAGTGAAAATATAAAAATAAAAAATAAAAAAAGAAGGAGAGCCAA
AAGCCGAAGAAGCCCTAGAGTTCGTCTCGAGAGAGAGCTTTCTCATTCAT
CAGCATAAAACCAAATATCAAATTCACAAGCTCCCGAGATGCATAAGCTG
AGTAGAAGTAACCGGGACAAACTCCAACAATTTGTCTCGATAACTGGGGC
AAGCGAAAAAGCTGCTCTTCAGGCTTTGAAGGCTAGTGACTGGCATCTTG
AAGGAGCATTTGATGTATTCTATAGCCAACCTCAATCAAAATCACTAACT
GATACCAGACATTTGGAGGAGCTTTATAACAGATATAAAGATCCATATCT
TGATATGATTCTGGTTGACGGTATCACTCTCCTGTGCAATGACCTTCAGG
TGGATCCTCAAGATATAGTTATGTTAGTTGTTTCATGGCACATGAAAGCT
GCTACAATGTGTGAATTCTCAAAGCAGGAGTTCATAGGTGGGTTGCAATC
ACTAGGGATAGATTCTCTGGATAAGTTCCGTGAAAGGATATCATTCATGC
GGGCTGAGCTGAAAGATGAACAAAAATTCCGTGAGATATACAACTCTGCA
TTTGCCTGGGCAAAAGAAAAGGGTCAGAAATCTCTGGCATTGGACACTGC
AATCGGAATGTGGCAATTATTATTTGCTGAGAAGCAGTGGCCACTAGTTG
ATCATTGGTGCCAGTTCTTGCAGGCTAAGCATAATAAAGCAATCT
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