DR403223

Overview
NameDR403223
Unique NameDR403223
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10980 contig Csv1_Contig10980:18..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403223 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.471e-11
Identity = 42/124 (33.87%), Postives = 70/124 (56.45%), Query Frame = 3 
Query:  420 RSLSQVLNFMDQMTESPFF-------SGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR------XXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 752
            R++ Q+++ MD++ E           SGT G +R  WD  + ++ + +  DMPGL KEDV+VS+E + LVI+                 +   Y +R+ LP+ + + D+IKAE+KNGVL +++P
Sbjct:  100 RTMRQMIDTMDRLFEDTMTFPGRNRASGT-GEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVK-DKIKAELKNGVLFISIP 221
[Close]
BLAST of DR403223 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 40/120 (33.33%), Postives = 67/120 (55.83%), Query Frame = 3 
Query:  420 RSLSQVLNFMDQMTESPFFSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRR-----YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVP 752
            RS+ Q+L+ MD++ E       R    G +R  W+ K+ +  + +  DMPG+ KEDV+VS+E + LVI+              R     Y +R+ LP+   + +++KAE+K+GVL +T+P
Sbjct:  100 RSMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEK-EKVKAELKDGVLYITIP 218
The following BLAST results are available for this feature:
BLAST of DR403223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HS21C_SOLLC1.471e-1133.87Small heat shock protein, chloroplastic OS=Solanum... [more]
HS21C_PEA9.533e-1133.33Small heat shock protein, chloroplastic OS=Pisum s... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244D23 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244D23 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403223 ID=DR403223; Name=DR403223; organism=Citrus sinensis; type=EST; length=752bp
GGGGGACAACGGAATTTCTTTCAAGAACCTTCTCCAATTCTCGGACCTTC
CACTGCCGCCTATAAATAGCAATTCACAGTCACGGAGCCATTTCGTCTTC
AGCAGGAAATCAGCCGCAGTCACAAAAAGTATTTTGAAATCTCTGCATTG
TTTTGTGCTTTCTTTAAGAATTCGGCTCAATGGCGTCCTCTCTTGCTCTC
AAGAGGCTTGTTTCTTTTAATCTCATCCCCAGGGCTTTACGCTGCACCGT
CGCTCCTTCTGCTACTTCGGCATCTCGGTTCTTCAACACAAACGCTGTTC
GTCAATACGATGACGGCGGAGACGACCGTGATCTCGACATTGATCGCCGT
TCCGCTCGCTCTTTCCCTCGCCGTCGTGACGACTTCTTCTCAGATGTGTT
TGATCCATTTTCACCAACAAGGAGCCTGAGCCAGGTCCTGAACTTCATGG
ATCAGATGACGGAGAGCCCTTTCTTCAGTGGCACGCGTGGTGGACTGCGC
CGAGGCTGGGATGCTAAAGAAACCGATGACGCATTGAACCTCAGCATCGA
CATGCCAGGGCTGGGCAAGGAAGACGTGAGAGTCTCTCTGGAGCAGAACA
CTCTGGTGATCAGAGGCGAGGGCGGAAAAGAAGGAGAGGGCGAAGAGAGC
GTGCGTAGGTACACCAGCAGGATTGATTTGCCAGAGAAGCTCTACAGGAC
TGATCAGATCAAGGCAGAGATGAAGAATGGTGTGCTGAAGGTGACGGTGC
CC
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