DR403219

Overview
NameDR403219
Unique NameDR403219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6075 contig Csv1_Contig6075:1..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403219 vs. ExPASy Swiss-Prot
Match: PSB4_ENCCU (Probable proteasome subunit beta type-4 OS=Encephalitozoon cuniculi GN=PRE4 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 74/196 (37.76%), Postives = 112/196 (57.14%), Query Frame = 3
Query:  225 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK----------NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDE---WHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 773
            +VTGT+VV+ +Y+DGI+M AD  GSYG   +   V+RI  +G  +LLG SGEISD Q L++ L  L   DN       + PK  H  + R++Y+ R+K  PL  S+ +GG+             +K LG V+ +G  +    V TG G +L  P LR+      E ++ E+ + L+E+ MR+L YRD +A N++Q+
Sbjct:   13 FVTGTTVVSFRYRDGIIMGADTRGSYGRLAKLSGVQRIFKVGDQTLLGMSGEISDMQYLVKTLTILTQEDN-----RRIDPKGYHKMIQRILYSARSKISPLNLSVCVGGLNAASDGDRRTHTREKMLGCVNHLGNFYFSDVVCTGIGGYLVLPFLRNRVEGREEEIAREEAIGLVEEAMRILCYRDCNASNEIQV 203          
BLAST of DR403219 vs. ExPASy Swiss-Prot
Match: PSB4_PIG (Proteasome subunit beta type-4 (Fragment) OS=Sus scrofa GN=PSMB4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.428e-27
Identity = 55/113 (48.67%), Postives = 83/113 (73.45%), Query Frame = 3
Query:  201 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNS 539
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MYNRR K +PLW +
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYNRRFKMNPLWTT 154          
BLAST of DR403219 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 56/172 (32.56%), Postives = 88/172 (51.16%), Query Frame = 3
Query:  234 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 746
            GT+ V L  K+G+++AAD   S G+ I  K+V +I  I +H  +  +G++ D   L+R L  E  LY +    G  +  K L + L  ++    +K+ P     ++GG     + L  V M+G   ED++ A G G   A  IL  E+ E +S  DG+KL  K + V + RD
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKS--TVGKEMSVKALATLLANIL--NGSKYFPYLGWFLVGGYDEKPR-LFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYREEMSVNDGIKLAVKAINVAIKRD 176          
BLAST of DR403219 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 55/172 (31.98%), Postives = 86/172 (50.00%), Query Frame = 3
Query:  234 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 746
            GT+ V +  KDG+++AAD   S G+ I  ++V +I  I +H  +  +G++ D   L+R L  E  LY +    G  +  K L + L  +M     K+ P     ++GG     K L  V M+G   ED +   G G   A  IL  E+ +NL+ E+G+KL  K +   + RD
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYS--QSGKRMSVKALATLLANIMNGA--KYFPYLAWFLVGGYDEKPK-LYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRD 176          
BLAST of DR403219 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 50/172 (29.07%), Postives = 83/172 (48.26%), Query Frame = 3
Query:  234 GTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNL-DELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRD 746
            GT+ V +   DG+++AAD   S G+ +  K+V +I  I +H  +  +G++ D   L+R L  E  LY      G  +  K L + L  ++   R      W   ++GG     + L  V M+G   ED +VA G G   A  +L  E+ E+L   +G+K+  + +   + RD
Sbjct:   10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLY--YAQSGKRMSVKALATLLANMLNGARMLPYLAW--FLVGGFDEKPR-LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRD 176          
BLAST of DR403219 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 50/187 (26.74%), Postives = 96/187 (51.34%), Query Frame = 3
Query:  225 YVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLD-ELILYDNMWDDGNSLGPKELHSYLTRVMYN--RRNKFDPLWNSLVLGGV-KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQI 773
            Y+ GT+ V +   DGI++A++   + G  I  K+ +++  I     +  +G + D Q+L+R +  E  LY    D+  ++        +T +M N   RN++ P+   L++GGV KNG     + +M G   E    ATG G+ +A  +L D++ EN++ ++G+ L  + +     RD ++   + +
Sbjct:    6 YLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTI------KGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDV 186          
The following BLAST results are available for this feature:
BLAST of DR403219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSB4_ENCCU2.124e-2937.76Probable proteasome subunit beta type-4 OS=Encepha... [more]
PSB4_PIG4.428e-2748.67Proteasome subunit beta type-4 (Fragment) OS=Sus s... [more]
PSMB_PYRFU3.888e-1532.56Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSMB_PYRHO1.930e-1431.98Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_PYRAB1.997e-1129.07Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSMB_METTE2.608e-1126.74Proteasome subunit beta OS=Methanosarcina thermoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244D16 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244D16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403219 ID=DR403219; Name=DR403219; organism=Citrus sinensis; type=EST; length=774bp
GGGGCCCTACGATTGTAATGTTTCTTGTTCAGCAGGATACCGAGTTAGTA
TAATAAAACACAAGGCTTCTCAGTTCTCAGAAGTTAGATCGTGAAGCCTC
AGTTGATCAGCTTTGCTATTTACTGAGAAAGTGAATCAAATCTCAAAACG
AATTAATGGAATCGATCCAAGCCAAACAAGGACTTGTCGGCCCTAACGAC
CCCATTCAAAGAACCCAGTTACCATATGTGACTGGTACGTCTGTTGTTGC
GCTGAAGTACAAAGATGGCATATTAATGGCTGCTGACATGGGAGGTTCCT
ATGGGTCAACAATCCGATACAAGAGTGTGGAACGGATTAAACCTATTGGA
AAGCATTCTCTACTGGGTGCCAGTGGAGAAATAAGTGATTTTCAGGAGCT
TTTGCGTAATCTTGATGAGCTTATACTTTATGACAATATGTGGGATGATG
GGAACTCTTTGGGGCCAAAAGAGTTGCACAGCTATTTGACCAGGGTCATG
TATAACAGGCGTAACAAGTTTGATCCATTGTGGAATTCTCTTGTGCTTGG
TGGAGTGAAAAATGGACAGAAATATCTTGGCATGGTATCAATGATAGGAG
TGAACTTTGAGGACAGCCATGTTGCAACTGGGTTTGGGAATCATCTTGCA
AGGCCAATACTTCGTGATGAATGGCATGAAAACTTGAGCTATGAAGATGG
CGTTAAGTTGCTGGAAAAGTGCATGCGTGTGCTCCTGTATCGTGATAGAT
CTGCTGTCAACAAGCTGCAGATAG
back to top