DR403198

Overview
NameDR403198
Unique NameDR403198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_ACTPJ (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.676e-26
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVA+LGAAGGIGQ LA+L+K+  P+ + L LYD+   TPG+  DISH+ T+    G+ G+   E AL G ++VII AGV RKPGMTR DLFNINA IVK L E +A+ CPKA + ++
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSGEDPSE-ALKGANLVIITAGVARKPGMTRADLFNINADIVKNLVEKVAEVCPKACIGIV 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_ACTP7 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.676e-26
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVA+LGAAGGIGQ LA+L+K+  P+ + L LYD+   TPG+  DISH+ T+    G+ G+   E AL G ++VII AGV RKPGMTR DLFNINA IVK L E +A+ CPKA + ++
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSGEDPSE-ALKGANLVIITAGVARKPGMTRADLFNINADIVKNLVEKVAEVCPKACIGIV 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_ACTP2 (Malate dehydrogenase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.676e-26
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVA+LGAAGGIGQ LA+L+K+  P+ + L LYD+   TPG+  DISH+ T+    G+ G+   E AL G ++VII AGV RKPGMTR DLFNINA IVK L E +A+ CPKA + ++
Sbjct:    2 KVALLGAAGGIGQTLALLLKLRLPVGTDLALYDISPVTPGIAVDISHIPTSVSAVGYSGEDPSE-ALKGANLVIITAGVARKPGMTRADLFNINADIVKNLVEKVAEVCPKACIGIV 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_MORS2 (Malate dehydrogenase OS=Moritella sp. (strain 2D2) GN=mdh PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.564e-26
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  + GF G      AL G D+V+I AGV RKPGM R DLFNINAGI+K L    A+ CP A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTDVTITGFSGIDPTA-ALVGADVVLISAGVARKPGMDRSDLFNINAGIIKNLASKCAEVCPTACIGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_PSYIN (Malate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=mdh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.961e-26
Identity = 62/117 (52.99%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            K+AVLGAAGGIGQ LA+L+K++ P  S+L LYD+   TPGV  D+SH+ T+  V GF G      A+ G D+++I AGV RKPGM R DLFNINAGI+K L   +A+  P+A + +I
Sbjct:    2 KIAVLGAAGGIGQALALLLKLDLPANSILSLYDLAPVTPGVAKDLSHIPTSVKVEGFAGTDPTA-AIEGADVILISAGVARKPGMDRSDLFNINAGIIKNLVAKVAEVAPEACIGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_HAEPS (Malate dehydrogenase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=mdh PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.265e-25
Identity = 65/117 (55.56%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVLGAAGGIGQ LA+L+K+  P  + L LYD+   TPGV  D+SH+ T   V G+ G+     AL G ++V+I AGV RKPGM R DLFNINAGIV+ L E +A  CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGTNLALYDIAPVTPGVAVDVSHIPTAVKVVGYAGEDPTP-ALEGANLVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVATVCPTACVGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_EDWI9 (Malate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=mdh PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.608e-25
Identity = 64/117 (54.70%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V GF G +    AL G DIV+I AGV RKPGM R DLFN+NAGI++ L   +A+  P A + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKVCGF-GGEDASPALVGADIVLISAGVARKPGMDRSDLFNVNAGIIRNLIGQVARTSPNACIGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_VIBMI (Malate dehydrogenase (Fragment) OS=Vibrio mimicus GN=mdh PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.918e-24
Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  232 AAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            AAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V++ AGV RKPGM R DLFN+NAGIVK L E IA  CPKA V +I
Sbjct:    1 AAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVTIKGYAGEDPTP-ALEGADVVLVSAGVARKPGMDRADLFNVNAGIVKALAETIAVVCPKACVGII 110          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_HAEDU (Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.517e-24
Identity = 63/123 (51.22%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQ---LED---ALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KV VLGAAGGIGQ L++L+K+  P  + L LYD+   TPG+  DISH+ T+    G+ G+     L+D   AL   ++VII AG+ RKPGMTR DLFNINAGIVK L E +A+ CP A + ++
Sbjct:    2 KVTVLGAAGGIGQTLSLLLKLRLPAGADLALYDISPVTPGIAVDISHIPTSVNAIGYAGEDPSVALKDPSVALKDTNLVIITAGIARKPGMTRADLFNINAGIVKDLVEKVAEVCPMACIGIV 124          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_KLEPN (Malate dehydrogenase (Fragments) OS=Klebsiella pneumoniae GN=mdh PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.243e-23
Identity = 62/116 (53.45%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVL AAGGI Q LA+L+K +       LYD+   TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CP+A + +I
Sbjct:    2 KVAVLXAAGGI-QALALLLKTS-------LYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGII 108          
The following BLAST results are available for this feature:
BLAST of DR403198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_ACTPJ2.676e-2655.56Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ACTP72.676e-2655.56Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_ACTP22.676e-2655.56Malate dehydrogenase OS=Actinobacillus pleuropneum... [more]
MDH_MORS24.564e-2655.56Malate dehydrogenase OS=Moritella sp. (strain 2D2)... [more]
MDH_PSYIN5.961e-2652.99Malate dehydrogenase OS=Psychromonas ingrahamii (s... [more]
MDH_HAEPS2.265e-2555.56Malate dehydrogenase OS=Haemophilus parasuis serov... [more]
MDH_EDWI98.608e-2554.70Malate dehydrogenase OS=Edwardsiella ictaluri (str... [more]
MDH_VIBMI1.918e-2455.86Malate dehydrogenase (Fragment) OS=Vibrio mimicus ... [more]
MDH_HAEDU9.517e-2451.22Malate dehydrogenase OS=Haemophilus ducreyi GN=mdh... [more]
MDH_KLEPN1.243e-2353.45Malate dehydrogenase (Fragments) OS=Klebsiella pne... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244C06 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403198 ID=DR403198; Name=DR403198; organism=Citrus sinensis; type=EST; length=559bp
GGGGACCGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACT
AAGTCTCCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATC
AACGCATTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATA
GAGGGAGAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGG
GTCGCCCGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGAC
AGCCTCTGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCAT
CTTTATGATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACAT
GGATACAAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGG
ATGCCCTCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGG
AAACCTGGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGT
TAAGACCCTTTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGA
ACTTGATTA
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