DR403198

Overview
NameDR403198
Unique NameDR403198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDHC_YEAST (Malate dehydrogenase, cytoplasmic OS=Saccharomyces cerevisiae GN=MDH2 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.243e-23
Identity = 62/120 (51.67%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKI---------NPLVSVLHL--YDVVNTP--GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC 534
            K+A+LGAAGGIGQ L++L+K          N  V+ +HL  YDV      GVTAD+SH+DT   V        +E+ L    IV+IPAGVPRKPGMTRDDLFN+NAGI+  L + IA+CC
Sbjct:   15 KIAILGAAGGIGQSLSLLLKAQLQYQLKESNRSVTHIHLALYDVNQEAINGVTADLSHIDTPISVSSHSPAGGIENCLHNASIVVIPAGVPRKPGMTRDDLFNVNAGIISQLGDSIAECC 134          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_SALMU (Malate dehydrogenase (Fragment) OS=Salmonella muenchen GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.052e-22
Identity = 59/107 (55.14%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  244 IGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            IGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+  +  AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    1 IGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED-VTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 106          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_KLEVA (Malate dehydrogenase (Fragment) OS=Klebsiella variicola GN=mdh PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.404e-19
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  301 LYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            LYD+   TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CP+A + +I
Sbjct:    2 LYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACIGVI 87          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_KLEOX (Malate dehydrogenase (Fragment) OS=Klebsiella oxytoca GN=mdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.572e-18
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 1
Query:  319 TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK CP+A V +I
Sbjct:    4 TPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTCPQACVGII 82          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_KLEPR (Malate dehydrogenase (Fragment) OS=Klebsiella pneumoniae subsp. rhinoscleromatis GN=mdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 1
Query:  301 LYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            LYD+   TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK  P+A + +I
Sbjct:    2 LYDIAPVTPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTRPQACIGII 87          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_KLETE (Malate dehydrogenase (Fragment) OS=Klebsiella terrigena GN=mdh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.965e-17
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  319 TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            TPGV  D+SH+ T+  ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + IAK  P+A + +I
Sbjct:    6 TPGVAVDLSHIPTDVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAKTSPQACIGII 84          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH2_ANADE (Malate dehydrogenase 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 51/121 (42.15%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            K+A++G  G IG  LA L  +  L  V+ L+D+V     G T DI+     A V GF     G    ED + G D+VI+ AG+PRKPGM+RDDL  +N+ I+ T+ EGI +  P A V +I
Sbjct:    5 KIALIGG-GQIGGVLAQLAALRELGDVV-LFDIVEGLPQGKTLDIAEA---APVDGFDVSLKGTNTYED-IKGADVVIVTAGLPRKPGMSRDDLIAVNSKIMTTVAEGIKQYAPNAFVIVI 119          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_RHOCS (Malate dehydrogenase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=mdh PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.398e-12
Identity = 50/120 (41.67%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHMD-TNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            K+A++GA G IG  LA+L     L  ++ L D+ +  GV      DI+          G+ G     D L G D+VI+ AGVPRKPGM+RDDL  INA I+K + EGI    P A V +I
Sbjct:    5 KIALVGA-GQIGGTLALLAGQKELGDIV-LLDIPDAEGVAKGKALDIAEASPVEGFDAGYTGTSNYAD-LAGADVVIVTAGVPRKPGMSRDDLVGINARIIKAVGEGIRTHAPDAFVIVI 121          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_PELUB (Malate dehydrogenase OS=Pelagibacter ubique GN=mdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11
Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-NAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K++++GA G IG  LA L+    +   + L+DV +    G   DI+   + +     F G    ED +   D++II AGVPRKPGM+RDDL  IN  I+K + EGI K  P A V
Sbjct:    3 KISLIGA-GQIGGTLAHLIGTKEVADEVVLFDVASGIAKGKALDIAQSSSVDGFNVKFSGTDNYED-IKDSDVIIITAGVPRKPGMSRDDLLGINLKIIKQVAEGIKKNAPNAFV 115          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_FLAJ1 (Malate dehydrogenase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=mdh PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11
Identity = 44/121 (36.36%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KV ++GA G +G   A ++    + S + L D+      G   DI+   TN    GF     G         G D+V+I +G+PRKPGMTR++L  INAGIVKT+ E + K  P  I+ ++
Sbjct:    2 KVTIVGA-GNVGATCADVISYRGIASEVVLLDIKEGFAEGKALDITQCATNT---GFNTKVSGVTNDYSKTAGSDVVVITSGIPRKPGMTREELIGINAGIVKTVAENVLKYSPNTIIVVV 118          
The following BLAST results are available for this feature:
BLAST of DR403198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDHC_YEAST1.243e-2351.67Malate dehydrogenase, cytoplasmic OS=Saccharomyces... [more]
MDH_SALMU1.052e-2255.14Malate dehydrogenase (Fragment) OS=Salmonella muen... [more]
MDH_KLEVA5.404e-1954.02Malate dehydrogenase (Fragment) OS=Klebsiella vari... [more]
MDH_KLEOX1.572e-1856.25Malate dehydrogenase (Fragment) OS=Klebsiella oxyt... [more]
MDH_KLEPR1.019e-1752.87Malate dehydrogenase (Fragment) OS=Klebsiella pneu... [more]
MDH_KLETE2.965e-1753.75Malate dehydrogenase (Fragment) OS=Klebsiella terr... [more]
MDH2_ANADE3.751e-1242.15Malate dehydrogenase 2 OS=Anaeromyxobacter dehalog... [more]
MDH_RHOCS6.398e-1241.67Malate dehydrogenase OS=Rhodospirillum centenum (s... [more]
MDH_PELUB1.091e-1140.00Malate dehydrogenase OS=Pelagibacter ubique GN=mdh... [more]
MDH_FLAJ11.091e-1136.36Malate dehydrogenase OS=Flavobacterium johnsoniae ... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244C06 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403198 ID=DR403198; Name=DR403198; organism=Citrus sinensis; type=EST; length=559bp
GGGGACCGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACT
AAGTCTCCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATC
AACGCATTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATA
GAGGGAGAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGG
GTCGCCCGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGAC
AGCCTCTGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCAT
CTTTATGATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACAT
GGATACAAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGG
ATGCCCTCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGG
AAACCTGGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGT
TAAGACCCTTTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGA
ACTTGATTA
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