DR403198

Overview
NameDR403198
Unique NameDR403198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_RICB8 (Malate dehydrogenase OS=Rickettsia bellii (strain OSU 85-389) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA----VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            K++++G+ G IG  LA L+ +  L  ++ L+DV      G   DI   +T A     ++G    + +E    G D +II AG+PRKPGM+RDDL ++N GI+K++ E + K  P A V +I
Sbjct:    6 KISLIGS-GNIGGMLAHLISLKNLGDIV-LFDVAEGIPQGKALDIMQANTLAGSDIKIKGTNDYKDIE----GSDAIIITAGLPRKPGMSRDDLISVNTGIMKSVAENVKKYAPNAFVIVI 120          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_RICBR (Malate dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=mdh PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA----VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            K+ ++G+ G IG  LA L+ +  L  ++ L+DV      G   DI   +T A     ++G    + +E    G D +II AG+PRKPGM+RDDL ++N GI+K++ E + K  P A V +I
Sbjct:    6 KILLIGS-GNIGGTLAHLISLKNLGDIV-LFDVAEGIPQGKALDIMQANTLAGSDIKIKGTNDYKDIE----GSDAIIITAGLPRKPGMSRDDLISVNTGIMKSVAENVKKYAPNAFVIVI 120          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_RHORT (Malate dehydrogenase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.147e-11
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K+A++GA G IG  LA L+ +  L  V+ L+D+   TP G   DI+       V           A+   D+VI+ AGVPRKPGM+RDDL  INA ++  + +GI   CP A V
Sbjct:    5 KIALVGA-GNIGGTLAHLIGLKELGDVV-LFDIAEGTPQGKALDIAESTPIEGVDASYSGSNDYAAIKDADVVIVTAGVPRKPGMSRDDLIGINAKVMSAVGQGIRANCPNAFV 116          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_RHOSK (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K+A++GA G IG  LA L  I  L  V+ L+D+   TP G   DI+    +      +      + + G D+ I+ AGVPRKPGM+RDDL  IN  ++K++ EGI    P A V
Sbjct:    5 KIALIGA-GQIGGTLAHLAAIKELGDVV-LFDIAEGTPQGKALDIAQSGPSEGFDAVMKGANSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHAPNAFV 116          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_RHOS4 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=mdh PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K+A++GA G IG  LA L  I  L  V+ L+D+   TP G   DI+    +      +      + + G D+ I+ AGVPRKPGM+RDDL  IN  ++K++ EGI    P A V
Sbjct:    5 KIALIGA-GQIGGTLAHLAAIKELGDVV-LFDIAEGTPQGKALDIAQSGPSEGFDAVMKGANSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHAPNAFV 116          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_RHOS1 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K+A++GA G IG  LA L  I  L  V+ L+D+   TP G   DI+    +      +      + + G D+ I+ AGVPRKPGM+RDDL  IN  ++K++ EGI    P A V
Sbjct:    5 KIALIGA-GQIGGTLAHLAAIKELGDVV-LFDIAEGTPQGKALDIAQSGPSEGFDAVMKGANSYEEIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHAPNAFV 116          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_AZOC5 (Malate dehydrogenase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K+A++GA G IG  LA+L  +  L  V+ L+D+V     G   D++ +   A            + + G D+VI+ AGVPRKPGM+RDDL  +N  +++    GIAK  P A V
Sbjct:    5 KIALIGA-GQIGGTLALLAGLKELGDVV-LFDLVEGVPQGKALDLAELSPVAGFDAAFAGTGAYEQIAGADVVIVTAGVPRKPGMSRDDLLAVNLKVMEQAGAGIAKYAPDAFV 116          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_SILPO (Malate dehydrogenase OS=Silicibacter pomeroyi GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K+A++GA G IG  LA L+ +  L  V+ L+D+   TP G   DI+    +      L   Q    + G D+ I+ AGVPRKPGM+RDDL  IN  ++K++ EGI    P A V
Sbjct:    5 KIALIGA-GQIGGTLAHLVALKELGDVV-LFDIAEGTPEGKALDIAESGPSEGFDAKLKGTQSYADIAGADVCIVTAGVPRKPGMSRDDLLGINLKVMKSVGEGIRDNAPDAFV 116          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_RICPU (Malate dehydrogenase OS=Rickettsia peacockii (strain Rustic) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNA----VVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            K++++G+ G IG  LA L+ +  L  ++ L+DV      G   D+    T A     ++G    + +E    G D +II AG+PRKPGM+RDDL +IN GI+KT+   + K  P A V +I
Sbjct:    6 KISLIGS-GNIGGTLAHLISLRELGDIV-LFDVTEGVPQGKALDLMQAGTIAGSDIKIKGTNDYKDIE----GSDAIIITAGLPRKPGMSRDDLISINTGIMKTVAANVKKYAPDAFVIVI 120          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_RICAH (Malate dehydrogenase OS=Rickettsia akari (strain Hartford) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFL---GQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            K++++G+ G IG  LA L+ +  L  ++ L+DV         +  M  + +    +   G    +D + G D +II AG+PRKPGM+RDDL +IN GI+K + E + K  P A V +I
Sbjct:    6 KISLIGS-GNIGGTLAHLISLRELGDIV-LFDVAEGVPQGKALDLMQASTIAGSDIKITGTNDYKD-IEGSDAIIITAGLPRKPGMSRDDLISINTGIMKNVAENVKKYAPDAFVIVI 120          
The following BLAST results are available for this feature:
BLAST of DR403198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_RICB82.431e-1137.19Malate dehydrogenase OS=Rickettsia bellii (strain ... [more]
MDH_RICBR3.175e-1137.19Malate dehydrogenase OS=Rickettsia bellii (strain ... [more]
MDH_RHORT4.147e-1140.35Malate dehydrogenase OS=Rhodospirillum rubrum (str... [more]
MDH_RHOSK5.417e-1139.47Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]
MDH_RHOS45.417e-1139.47Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]
MDH_RHOS15.417e-1139.47Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]
MDH_AZOC55.417e-1137.72Malate dehydrogenase OS=Azorhizobium caulinodans (... [more]
MDH_SILPO7.074e-1140.35Malate dehydrogenase OS=Silicibacter pomeroyi GN=m... [more]
MDH_RICPU7.074e-1137.19Malate dehydrogenase OS=Rickettsia peacockii (stra... [more]
MDH_RICAH7.074e-1135.59Malate dehydrogenase OS=Rickettsia akari (strain H... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244C06 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403198 ID=DR403198; Name=DR403198; organism=Citrus sinensis; type=EST; length=559bp
GGGGACCGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACT
AAGTCTCCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATC
AACGCATTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATA
GAGGGAGAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGG
GTCGCCCGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGAC
AGCCTCTGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCAT
CTTTATGATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACAT
GGATACAAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGG
ATGCCCTCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGG
AAACCTGGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGT
TAAGACCCTTTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGA
ACTTGATTA
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