DR403198

Overview
NameDR403198
Unique NameDR403198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9651 contig Csv1_Contig9651:95..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_RHOS5 (Malate dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K+A++GA G IG  LA L  I  L  V+ L+D+   TP G   DI+    +      +      + + G D+ I+ AGVPRKPGM+RDDL  IN  ++K++ EGI    P A V
Sbjct:    5 KIALIGA-GQIGGTLAHLAAIKELGDVV-LFDIAEGTPQGKALDIAQSGPSEGFDAVMKGANSYEDIAGADVCIVTAGVPRKPGMSRDDLIGINLKVMKSVGEGIKAHAPNAFV 116          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_PARL1 (Malate dehydrogenase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=mdh PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 43/114 (37.72%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K+A++G  G IG  LA+L  +  L  V+ ++D+      G   D++           L        + G D+VI+ AGVPRKPGM+RDDL  IN  ++K + EGIAK  P A V
Sbjct:    5 KIALIGG-GQIGGTLALLAGLKELGDVV-IFDIAEGLPQGKALDLAQTGPVEGYNTALSGANDYKGIKGADVVIVTAGVPRKPGMSRDDLLGINLKVMKQVGEGIAKYAPNAFV 116          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_ROSDO (Malate dehydrogenase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K+A++GA G IG  LA L  +  L  V+ L+D+      G   DI+    +A     +   Q    + G D+ I+ AGV RKPGM+RDDL  IN  ++K++ EGIA   P A V
Sbjct:    5 KIALIGA-GQIGGTLAHLAALKELGDVV-LFDIAEGIPEGKALDIAESGPSAKFDARMSGTQSYADIAGADVCIVTAGVARKPGMSRDDLLGINLKVMKSVGEGIAAHAPNAFV 116          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_GEOSM (Malate dehydrogenase OS=Geobacter sp. (strain M21) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            K+A++G  G IG  LA L  +  L  V+ ++D+V     G   DI+ + +   V GF     G    ED + G D+VI+ AG+PRKPGM+RDDL  +N+ I+ ++ EGI    P A V +I
Sbjct:    5 KIALIGG-GQIGGVLAQLAALRELGDVV-MFDIVEGLPQGKMLDIAEVGS---VDGFDCNLKGTNSYED-IKGSDVVIVTAGLPRKPGMSRDDLIEVNSKIMTSVAEGIKANAPNAFVIVI 119          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_GEOSL (Malate dehydrogenase OS=Geobacter sulfurreducens GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 47/121 (38.84%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            K+A++G  G IG  LA L  +  L  V+ L+D+V     G   DI+       V GF     G    ED + G D+VI+ AG+PRKPGM+RDDL  +N+ I+ ++ EGI +  P + V +I
Sbjct:    5 KIALIGG-GQIGGVLAQLCALRELGDVV-LFDIVEGLPQGKCLDIAEASP---VDGFDVCLKGTNSYED-IAGADVVIVTAGLPRKPGMSRDDLIEVNSKIMTSVAEGIKQYAPNSFVIVI 119          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_GEOBB (Malate dehydrogenase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTNAVVRGF----LGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            K+A++G  G IG  LA L  +  L  V+ ++D+V     G   DI+ + +   V GF     G    ED + G D+VI+ AG+PRKPGM+RDDL  +N+ I+ ++ EGI    P A V +I
Sbjct:    5 KIALIGG-GQIGGVLAQLAALRELGDVV-MFDIVEGLPQGKMLDIAEVGS---VDGFDCNLKGTNSYED-IKGADVVIVTAGLPRKPGMSRDDLIEVNSKIMTSVAEGIKANAPNAFVIVI 119          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_FRATN (Malate dehydrogenase OS=Francisella tularensis subsp. novicida (strain U112) GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV------VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K+A++GA G IG  LA L  +  L  V+ L+D+         +  + T  +      VRG    + LE++    D+VI+ AGVPRKPGM+RDDL  IN  +++T+ EGI   CP A V
Sbjct:    5 KIALVGA-GNIGGTLAHLALLKQLGDVV-LFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENS----DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFV 116          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_FRANO (Malate dehydrogenase OS=Francisella novicida GN=mdh PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAV------VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIV 549
            K+A++GA G IG  LA L  +  L  V+ L+D+         +  + T  +      VRG    + LE++    D+VI+ AGVPRKPGM+RDDL  IN  +++T+ EGI   CP A V
Sbjct:    5 KIALVGA-GNIGGTLAHLALLKQLGDVV-LFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENS----DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFV 116          
The following BLAST results are available for this feature:
BLAST of DR403198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_RHOS57.074e-1139.47Malate dehydrogenase OS=Rhodobacter sphaeroides (s... [more]
MDH_PARL17.074e-1137.72Malate dehydrogenase OS=Parvibaculum lavamentivora... [more]
MDH_ROSDO9.239e-1138.60Malate dehydrogenase OS=Roseobacter denitrificans ... [more]
MDH_GEOSM9.239e-1138.84Malate dehydrogenase OS=Geobacter sp. (strain M21)... [more]
MDH_GEOSL9.239e-1138.84Malate dehydrogenase OS=Geobacter sulfurreducens G... [more]
MDH_GEOBB9.239e-1138.84Malate dehydrogenase OS=Geobacter bemidjiensis (st... [more]
MDH_FRATN9.239e-1138.98Malate dehydrogenase OS=Francisella tularensis sub... [more]
MDH_FRANO9.239e-1138.98Malate dehydrogenase OS=Francisella novicida GN=md... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244C06 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403198 ID=DR403198; Name=DR403198; organism=Citrus sinensis; type=EST; length=559bp
GGGGACCGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACT
AAGTCTCCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATC
AACGCATTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATA
GAGGGAGAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGG
GTCGCCCGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGAC
AGCCTCTGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCAT
CTTTATGATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACAT
GGATACAAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGG
ATGCCCTCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGG
AAACCTGGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGT
TAAGACCCTTTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGA
ACTTGATTA
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