DR403198

Overview
NameDR403198
Unique NameDR403198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9651 contig Csv1_Contig9651:95..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_SHIF8 (Malate dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.086e-27
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKNCPKACIGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_SHESH (Malate dehydrogenase OS=Shewanella sediminis (strain HAW-EB3) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.086e-27
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAAACPKALIGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_AERS4 (Malate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.086e-27
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T+  V+GF G+     AL G D+V+I AGV RKPGM R DLFNIN GIVK L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNRLPAGSELSLYDIAPVTPGVAVDLSHIPTDVKVKGFCGEDP-SPALVGADVVLISAGVARKPGMDRSDLFNINPGIVKNLVEKCAASCPKALIGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_SHEPA (Malate dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.419e-27
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGEDPTA-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATCPKALIGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_SHELP (Malate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.419e-27
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF G+     AL G D+V+I AGV RKPGM R DLFNINAGIV+ L E  A  CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVRNLVEKCAATCPKALIGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_SALDC (Malate dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.419e-27
Identity = 68/117 (58.12%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV R+PGM R DLFN+NAGIVK L + IAK CPKA V +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARRPGMDRSDLFNVNAGIVKNLVQQIAKTCPKACVGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.419e-27
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   V+GF G+     AL   D+V+I AGV RKPGM R DLFN+NAGIV+ L E +A+ CPKA++ +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKNQLPAGSELSLYDIAPVTPGVAADLSHIPTQVRVKGFAGEDP-SPALKDADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIEKVAQNCPKALIGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_ECOSE (Malate dehydrogenase OS=Escherichia coli (strain SE11) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.419e-27
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + ++K CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVSKTCPKACIGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDH_ALISL (Malate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.419e-27
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVAV+GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+     AL G D+V+I AGV RKPGM R DLFNINAGIVK+L E IA  CPKA + +I
Sbjct:    2 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTPVSIKGYCGEDPTP-ALEGADVVLISAGVARKPGMDRSDLFNINAGIVKSLAEKIAVTCPKACIGII 117          
BLAST of DR403198 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.419e-27
Identity = 58/115 (50.43%), Postives = 85/115 (73.91%), Query Frame = 1
Query:  214 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 558
            KVA+LGA+GG+GQPL++L+K++P VS L LYD+    G+  D+SH++TN+   G+  +  +E+ L+   +V+IPAGVPRKPG+TRDDLF +NAGIVK+L   + K  P A + +I
Sbjct:    3 KVAILGASGGVGQPLSLLLKLSPYVSELALYDIRAAEGIGKDLSHINTNSSCVGY-DKDSIENTLSNAQVVLIPAGVPRKPGLTRDDLFKMNAGIVKSLVTAVGKFAPNARILVI 116          
The following BLAST results are available for this feature:
BLAST of DR403198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_SHIF81.086e-2757.26Malate dehydrogenase OS=Shigella flexneri serotype... [more]
MDH_SHESH1.086e-2758.12Malate dehydrogenase OS=Shewanella sediminis (stra... [more]
MDH_AERS41.086e-2758.12Malate dehydrogenase OS=Aeromonas salmonicida (str... [more]
MDH_SHEPA1.419e-2758.12Malate dehydrogenase OS=Shewanella pealeana (strai... [more]
MDH_SHELP1.419e-2758.12Malate dehydrogenase OS=Shewanella loihica (strain... [more]
MDH_SALDC1.419e-2758.12Malate dehydrogenase OS=Salmonella dublin (strain ... [more]
MDH_PROMH1.419e-2757.26Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDH_ECOSE1.419e-2756.41Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ALISL1.419e-2758.12Malate dehydrogenase OS=Aliivibrio salmonicida (st... [more]
MDHP_YEAST1.419e-2750.43Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244C06 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403198 ID=DR403198; Name=DR403198; organism=Citrus sinensis; type=EST; length=559bp
GGGGACCGCATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACT
AAGTCTCCAGAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATC
AACGCATTGCGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATA
GAGGGAGAGAGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGG
GTCGCCCGGATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGAC
AGCCTCTGGCTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCAT
CTTTATGATGTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACAT
GGATACAAATGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGG
ATGCCCTCACGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGG
AAACCTGGAATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGT
TAAGACCCTTTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGA
ACTTGATTA
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