DR403188

Overview
NameDR403188
Unique NameDR403188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR403188_ssr623 microsatellite DR403188_ssr623:623..632. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:250..996. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.034e-30
Identity = 75/151 (49.67%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  105 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 548
            R  NV DP S+D W   D F +       S A       N R+DWKETP AHVF ADLPG+R          G +L ISGER++E++   KND +WH VERSSGKF RR+RLP  A+V+QV ASM+NGVLTVT            AI ISG
Sbjct:    5 RSGNVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.303e-25
Identity = 59/134 (44.03%), Postives = 85/134 (63.43%), Query Frame = 3
Query:   99 GGRRTNVFDPFSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTVT 494
            GG      +P S+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF AD+PG+R           ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTIT 159          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.493e-24
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 3
Query:  225 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTVT 494
            AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+E+K D WHRVERS GKF R++RLP N  ++ VKA +ENGVLT+T
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLT 156          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.493e-24
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  219 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTVT 494
            ++AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+++K D WHRVERS GKF R+++LP N  ++ VKA MENGVLT+T
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLT 164          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.070e-22
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  201 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTV 491
            R+TS   + AR+DWKET + H    D+PGL+            +L++SGER +E+E+K D+WHRVERS GKF R+++LPDN  +E VKA +ENGVLT+
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTI 159          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22
Identity = 53/74 (71.62%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  327 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 548
            ILQISGER+ E+E+KND WHRVERSSGKF+R +RLPDNAKV+QVKASMENGVLTVT            AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.635e-21
Identity = 55/127 (43.31%), Postives = 80/127 (62.99%), Query Frame = 3
Query:  117 VFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTVT 494
            +FD  + D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+ADLP G++          G +L I+GERS  +EEK  + H +ERS   F  R+ LPD+A V+ V+ASM+ G+LTVT
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVT 131          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.088e-18
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  204 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTV 491
            + +  + AR+DW+ET  AH    D+PG+R           R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 3
Query:  186 APSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTVT 494
            A ++A E +  A AR DWKETP+AHV   D+PG+R            R+L++SGER     ++E+E + D  +WHR ER++G+F RR+R+P  A V +V A +++GVLTVT
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVT 169          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.654e-15
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  183 NAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTVT 494
            NAPS    R+    A    D KE P ++VF  D+PGL+            +L ISGER +E+E++  K+ R+ER  GKF+R++ LP+NA  + + A  ++GVLTVT
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
The following BLAST results are available for this feature:
BLAST of DR403188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ9.034e-3049.6716.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ2.303e-2544.0318.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN1.493e-2455.5622.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA1.493e-2453.2622.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH1.070e-2250.0022.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN4.065e-2271.62Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17B_ORYSJ2.635e-2143.3117.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS232_ORYSJ2.088e-1846.0023.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ6.074e-1844.1421.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE1.654e-1540.5717.3 kDa class II heat shock protein OS=Solanum pe... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403188 ID=DR403188; Name=DR403188; organism=Citrus sinensis; type=EST; length=748bp
GGGGATCTTCGAATTGATTGATCAAAACACTTCTGAAGTTGTTGAGCATT
TAATTAGCGCCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAGAAG
TGAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAGAGG
AGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAG
CAGTGGCAAGTTCCTGAGGAGGTACAGGTTGCCCGACAATGCTAAGGTGG
AGCAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTGACTGTTCCT
AAACAGGAGGAGAAGAAACCTGAAGTTAAGGCCATTGAGATCTCTGGCTA
AGTGATAAGTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAATAAA
TTTGGTACGAAAGCAAAGCCCTTGTGTGTGTGTNGTGTGTGTTTGCAAGA
GCTTCCCTTCCCCCCTNNNTAATTTGATGTGATTATGTTTGTGTGTTTGC
AAGAGCTTCAGGAGCCAGTCTCAAGCGTTGTAACTAGTTTTTTAAATG
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