DR403188

Overview
NameDR403188
Unique NameDR403188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  234 DWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTVT 494
            D KE P A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R++ LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.311e-12
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  183 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTVT 494
            N PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+++LPDNA +E++ A+  +GVL VT
Sbjct:   30 NNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 44/119 (36.97%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  153 FDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTV 491
            F G     L   P      S  A A +DW ETP +HV + ++PGL           G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  219 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRYRLPDNAKVEQVKASMENGVLTVT 494
            A   +DW+ETP AHVF+ DLPGL           G IL++              +G+ S E+EE+ND  +WH  ER++G+    + ++RLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of DR403188 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  183 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRYRLPDNAKVEQVKASMENGVLTVT 494
            N PS    R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+++LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
The following BLAST results are available for this feature:
BLAST of DR403188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP21_MAIZE1.311e-1244.8317.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS177_ARATH1.311e-1237.3817.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP16_ORYSJ1.712e-1236.9716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS178_ORYSJ1.712e-1237.8417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS176_ARATH1.892e-1135.5117.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B18 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403188 ID=DR403188; Name=DR403188; organism=Citrus sinensis; type=EST; length=748bp
GGGGATCTTCGAATTGATTGATCAAAACACTTCTGAAGTTGTTGAGCATT
TAATTAGCGCCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAGAAG
TGAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAGAGG
AGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAG
CAGTGGCAAGTTCCTGAGGAGGTACAGGTTGCCCGACAATGCTAAGGTGG
AGCAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTGACTGTTCCT
AAACAGGAGGAGAAGAAACCTGAAGTTAAGGCCATTGAGATCTCTGGCTA
AGTGATAAGTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAATAAA
TTTGGTACGAAAGCAAAGCCCTTGTGTGTGTGTNGTGTGTGTTTGCAAGA
GCTTCCCTTCCCCCCTNNNTAATTTGATGTGATTATGTTTGTGTGTTTGC
AAGAGCTTCAGGAGCCAGTCTCAAGCGTTGTAACTAGTTTTTTAAATG
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