DR403175

Overview
NameDR403175
Unique NameDR403175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR403175 vs. ExPASy Swiss-Prot
Match: RS29_SCHPO (40S ribosomal protein S29 OS=Schizosaccharomyces pombe GN=rps29 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12
Identity = 33/56 (58.93%), Postives = 36/56 (64.29%), Query Frame = 2 
Query:   89 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 256
            M H NVW SHP+ YG GSR C   G    +IRKYGL   RQ FR  A +IGFVKYR
Sbjct:    1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVKYR 56
The following BLAST results are available for this feature:
BLAST of DR403175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_SCHPO6.748e-1258.9340S ribosomal protein S29 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244A19 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244A19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403175 ID=DR403175; Name=DR403175; organism=Citrus sinensis; type=EST; length=660bp
GGGGATTCCTCAGCAGATTCTATGGGTTTTACACAAGCTTAAGCGAACCG
GCTTTNNTCTTTGTCAAGGAAGGAGAAAACAATCAATCATGGGTCACTCC
AACGTTTGGAACTCTCACCCCAAGACTTACGGCCCCGGTTCTCGCGCTTG
CCGGGTTTGTGGGAATCCTCATGCAATAATCAGGAAGTATGGGCTCATGT
GCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAGATTGGTTTTGTTAAG
TACCGCTAAATGATTAACATGTTGTCAACACCAGAAGGGGGGTTACCAGT
ACCATGCTGATTTTGTTTATCTGTGATACCTGTAGCGAATTTCTGTTTCT
CAAGGATTGTTAAGCGATGTTTTGTCTTAAATTGATTCAATGTTTGACAA
AGCAATTGTTGGACTAAGAATATCATTGATCATTCTTATTAAGGTTTAAT
CATTCTCACATTTTGGTGCTGAGTTATTCTTGTTCTTTCACCAGATCATC
AATCCAGCTCAGTGATTTTAAATTGGTTGAAATCAAGCCAACAGTGAATG
ATATTGATCATACACTGAGTGTGTCTTTTCCTCTGTTTCCTATCTTTTGG
TAAATATTCGAGTATTGAGCAATTTTTTCTGAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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