DR403166

Overview
NameDR403166
Unique NameDR403166
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5855 contig Csv1_Contig5855:8..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403166 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.065e-58
Identity = 104/175 (59.43%), Postives = 129/175 (73.71%), Query Frame = 3 
Query:  153 CCAKGPGYATPLDAMSGPREKLLYVTCLYTGTGREKPDYLTTVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYIVDTQKNPRAPSLHKVVEPADIVQKTGLSYPHTAHCLASGDILVSCLGDKDGNAEGSGFLLLD-S*FNVKGRWE 674
            C + GPGY TPLDAM GPRE++LY+ C+Y  TG  KPDYL TVD +P S  YS+VIHRLP+P   DELHHSGWN+CSSCYGD+S  R  L+LP L+S RIY+VD   +PRAP +HK VEP ++  K GL+  HT+HCL  G+I++S +GD  GN +G GF+LLD   F VKG WE
Sbjct:    4 CGSCGPGYKTPLDAMKGPREEILYLPCIYRNTGINKPDYLATVDVNPKSPKYSQVIHRLPMPNTNDELHHSGWNTCSSCYGDASKVRNKLILPCLISSRIYVVDVGTDPRAPRIHKTVEPYEVFWKCGLANLHTSHCLGCGEIMISSIGDPYGNGKG-GFVLLDGETFEVKGNWE 177
The following BLAST results are available for this feature:
BLAST of DR403166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP1_XENTR4.065e-5859.43Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244A04 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403166 ID=DR403166; Name=DR403166; organism=Citrus sinensis; type=EST; length=696bp
GGGGGTGTGATTGCGTTCTTATCATCCATTCTCTTCCTATCTTGATCTTT
CTTCAAAGTCTTTGTGTTGTTCTGTCTGTGTTTTTTTCTTGCTAATAAAT
GGCAACTGATACTGCGGTGGCTGANCACCGGTCGAGCAATAATGGCCATG
GTTGCTGCGCGAAAGGGCCTGGGTATGCAACTCCACTCGATGCCATGTCT
GGTCCTAGAGAGAAACTTCTCTATGTCACTTGTCTTTACACTGGTACTGG
AAGAGAGAAGCCTGATTACCTAACGACAGTGGATGCGGATCCTAGCTCTT
CTTCTTATTCAAAAGTTATTCATCGGCTCCCTGTGCCATACATTGGCGAT
GAACTACATCATTCGGGATGGAATTCATGTAGCTCATGCTATGGAGATTC
ATCTGCTCAACGGCGTTTTCTTGTCTTGCCTTCTTTGGTATCTGGTCGTA
TATACATAGTTGACACACAAAAAAATCCAAGGGCTCCCTCTTTGCATAAA
GTTGTTGAGCCTGCAGATATTGTACAGAAGACAGGATTATCTTATCCTCA
CACGGCTCATTGCCTTGCTTCTGGTGATATCCTGGTGTCATGCCTTGGAG
ATAAGGATGGAAATGCTGAGGGAAGTGGATTTCTTCTCCTTGACTCATAA
TTCAATGTGAAAGGAAGATGGGAAAAACCANNNCACAGTCCTGCTT
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