DN621644

Overview
NameDN621644
Unique NameDN621644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:63..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621644 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 41/121 (33.88%), Postives = 62/121 (51.24%), Query Frame = 2
Query:  275 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL----SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 625
            + ++   + ++Y   EE   R A + KN+ +I   N +      S+ + +N F D + EEF++   G         K   +      P + DWRE G V+PVK+QG CGSCW FS TG+LE
Sbjct:   29 WTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYSQGKHSFTMAMNTFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALE 148          
BLAST of DN621644 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 2
Query:  278 ARFARRYGKIYESVEEMKLRFATFSKN---LDLIRSTNCKGL-SYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 625
            A   R YG     + E + R A + KN   +DL      +G   +R+ +N F D + EEF++   G         K  H+     +P++ DW + G V+PVK+QG CGSCW FS TG+LE
Sbjct:   34 ATHRRLYG-----MNEEEWRRAVWEKNKKIIDLHNQEYSEGKHGFRMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKLFHEPLLVDVPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALE 148          
BLAST of DN621644 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 42/120 (35.00%), Postives = 60/120 (50.00%), Query Frame = 2
Query:  278 ARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLS----YRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 625
            A   R YG     + E   R A + KN+ +I   N +       + + +N F D + EEF++   G         K   +     +P++ DWRE G V+PVK+QG CGSCW FS TG+LE
Sbjct:   34 ATHRRLYG-----MNEEGWRRAVWEKNMKMIELHNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKMFQEPLFAEIPKSVDWREKGYVTPVKNQGQCGSCWAFSATGALE 148          
BLAST of DN621644 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 40/126 (31.75%), Postives = 58/126 (46.03%), Query Frame = 2
Query:  269 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQN------CSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEA 628
            L F +F  +Y K Y+S +E K R+  F  N++ I   N +  S    +N+FAD    E      G A        C               P + DWR    ++ VKDQG CG+CW F++ G+LE+
Sbjct:   38 LYFEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASGELGLNFCETIVVDGPAQRQR--PVSFDWRSMNKITSVKDQGMCGACWRFASLGALES 161          
BLAST of DN621644 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  275 FARFARRYGKIYESVEEMKLRFATFSKNL--DLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA---QNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEA 628
            + +F  +Y K Y   E+ ++RF  F  N+    +     +G S   G+  ++D + +EF R  L A+    +  + T  +     + +P+  DWRE G V+ VK+QG CGSCW FSTTG++E+
Sbjct:   20 YVQFKLKYRKQYHETED-EIRFNIFKSNILKAQLYQVFVRG-SAIYGVTPYSDLTTDEFARTHLTASWVVPSSRSNTPTSLGKEVNNIPKNFDWREKGAVTEVKNQGMCGSCWAFSTTGNVES 140          
BLAST of DN621644 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 42/115 (36.52%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  293 RYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYR----LGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 625
            ++GK Y   EE +L+ A + KN  +I   N + L  R    + +N F D +  EF +   G  +     T          +P+  DWR+ G V+PVK+QGHC S W FS TGSLE
Sbjct:   35 KHGKTYNMNEE-RLKRAVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQKIKKTHIFQDHQFLYVPKRVDWRQLGYVTPVKNQGHCASSWAFSATGSLE 148          
BLAST of DN621644 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  290 RRYGKIYESVEEMKLRFATFSKNLDLIRSTNCK---GL-SYRLGLNKFADWSWEEFQRHRLGAAQ--NCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLE 625
            + + K Y+   E ++R   + KNL  I   N +   G+ +Y++G+N   D + EE    R+GA +    S  T      +   LP+T DWRE G V+ VK QG CG+CW FS  G+LE
Sbjct:   41 KTHEKEYKDKNEEEVRRLIWEKNLKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEISC-RMGALRISRQSPKTVTFRSYSNRTLPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALE 157          
The following BLAST results are available for this feature:
BLAST of DN621644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
CATL1_CERAE3.109e-1133.88Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
CATL1_BOVIN3.109e-1135.83Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
CATL1_CANFA4.061e-1135.00Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]
CATV_NPVSE5.304e-1131.75Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATL_SCHMA5.304e-1133.33Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
TEST2_RAT6.927e-1136.52Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATS_MOUSE6.927e-1136.44Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06P22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621644 ID=DN621644; Name=DN621644; organism=Citrus sinensis; type=EST; length=632bp
TAATAATAGTGTTCATAGACTGCATTCATTTAATCCGAAGCCCTTGAGTG
CAGTGTGCTCTCTCCAAACAAAGCAGACACAATCATTAGGCATGGCTCGC
CCCGTACAGTTGGTCTCGTCCGTCATCTTGTTGCTTTGCTGCGCTGCCGC
AGCATCAGCATCAGCATCAAGCTTCGACGACTCCAATCCGATCAGATTGG
TATCATCGGACGGTCTCCGTGACTTCGAGACCTCCGTCCTCCAGGTGATC
GGCCAAGCCCGCCATGCTCTCTCCTTTGCCCGTTTTGCTCGCAGGTATGG
GAAGATTTACGAGTCCGTTGAGGAGATGAAGCTCCGGTTCGCGACTTTCT
CCAAGAACTTGGATTTAATCAGATCTACCAATTGTAAAGGCCTATCTTAC
AGGCTCGGGTTGAACAAGTTTGCTGACTGGAGCTGGGAAGAGTTCCAAAG
GCACAGGTTGGGAGCTGCGCAAAACTGCTCTGCCACTACAAAAGGAAATC
ACAAGCTTACTGCTGATGTGCTTCCAGAAACGAAAGACTGGAGGGAATCT
GGCATAGTAAGCCCAGTTAAAGACCAAGGTCACTGTGGATCTTGCTGGAC
TTTCAGCACGACTGGATCTCTTGAGGCTGCTT
back to top