DN621643

Overview
NameDN621643
Unique NameDN621643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621643 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = -3
Query:  311 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 541
            PV  AF V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  248 PVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of DN621643 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = -3
Query:  311 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 541
            PV  AF V   F  YKSGVY   + G+  M   HA+  +G+GVE+GVPYWL  NSW  +WGD+G+FK+  G+N CGI
Sbjct:  248 PVEGAFTVFSDFLTYKSGVYKH-EAGD--MMGGHAIRILGWGVENGVPYWLAANSWNLDWGDNGFFKILRGENHCGI 321          
BLAST of DN621643 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = -3
Query:  311 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 541
            PV  AF V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  248 PVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of DN621643 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = -3
Query:  311 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 541
            PV  AF V   F  YKSGVY         M   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  248 PVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of DN621643 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = -3
Query:  311 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 577
            E E+   +    PV  AF V   F  YKSGVY      +  +   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  236 EKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHV---SGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 321          
BLAST of DN621643 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = -3
Query:  287 GLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVG---VQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 733
            G  S + +Y+  NG +     YPY  K   C+  +  VG   V+      +    E  L +A+   +PVSV  E     F+ YK G++  + CG     V+HAV AVGYG   G  Y LIKNSWG  WG++GY ++         +CG+   + YP+
Sbjct:  198 GYQSTSLQYVAQNG-IHLRAKYPYIAKQQTCR--ANQVGGPKVKTNGVGRVQSNNEGSLLNAIAH-QPVSVVVESAGRDFQNYKGGIFEGS-CGTK---VDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 346          
BLAST of DN621643 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = -3
Query:  311 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVN-HAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 541
            PV  AF V + F  YK+GVY  T    T  ++  HA+  +G+G ++G PYWL+ NSW  NWG++GYF++  G N CGI
Sbjct:  251 PVEAAFTVYEDFYQYKTGVYVHT----TGQELGGHAIRILGWGTDNGTPYWLVANSWNVNWGENGYFRIIRGTNECGI 324          
BLAST of DN621643 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 49/171 (28.65%), Postives = 81/171 (47.37%), Query Frame = -3
Query:  281 GGLPSQAFEYIKYNGGLDTEEAYPYTG--KDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGV----------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 736
            GG    A+  +  N GL +E+ YP+ G  K   C  + +   V  +    +    E  + H + +  P++V   +    + Y+ GV  +T     P  V+H+V+ VG+G + +G+                PYW++KNSWG +WG+ GYF++  G N CG+     YP  A
Sbjct:  191 GGFVWDAYLTVLNNSGLASEKDYPFQGDRKPHRC-LAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPITVTINM-KLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKKKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGV---TKYPFTA 356          
BLAST of DN621643 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 54/161 (33.54%), Postives = 81/161 (50.31%), Query Frame = -3
Query:  287 GGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK------FSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 736
            GG P  A + +   G +     YPY G    C+      ++++  GV+ +   N     E  L +++   +PVSV  E     F+ Y+ G++    CGN    V+HAV AVGYG      Y LIKNSWG  WG++GY +++ G      +CG+ T + YPV
Sbjct:  198 GGYPWSALQLVAQYG-IHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN-----EGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 343          
BLAST of DN621643 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.202e-14
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = -3
Query:  311 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 577
            E E+   +    PV  AF V   F  YKSGVY         +   HA+  +G+GVE+G PYWL+ NSW  +WGD+G+FK+  G++ CGI
Sbjct:  236 EKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHV---TGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 321          
The following BLAST results are available for this feature:
BLAST of DN621643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
CATB_PONAB8.025e-1548.05Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_MOUSE8.025e-1551.95Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_MACFA8.025e-1548.05Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_HUMAN8.025e-1548.05Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CATB_BOVIN1.788e-1442.70Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
PAPA4_CARPA3.050e-1433.76Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CPR4_CAEEL3.050e-1446.15Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CATW_MOUSE3.983e-1428.65Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
PAPA1_CARPA5.202e-1433.54Papain OS=Carica papaya PE=1 SV=1[more]
CATB_PIG5.202e-1442.70Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06P22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621643 ID=DN621643; Name=DN621643; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTTCCTATAACAACTACCTTGCATTGACAAAATATATATAACATC
GTTGGTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCTCAGAAT
TTATTTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTATATGGAC
ATTAATCTCCGAATTTATTTCGTACATAAAGCCAACCATTCTGCTATCAT
TCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTGATAGCC
AGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGTATGATG
CACAAGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTAAAGTAG
CCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCAATATGG
AACACCATCTTCAACTCCGTACCCAACAGCAACGACGGCATGGTTCACAT
CCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTCTTGTAA
AATCGGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCGAACAAG
ACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGTTGACTG
AGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAATTTGCAGACACCA
TCTTTTCCGGTGTAGGGATATGCTTCCTCAGTATCAAGGCCACCATTGTA
CTTGATGTATTCAAAGGCTTGGGATGGCAACCCACCAT
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