DN621615

Overview
NameDN621615
Unique NameDN621615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN621615 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 42/117 (35.90%), Postives = 60/117 (51.28%), Query Frame = -2 
Query:  338 MVHPATGYSVVRSLSEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMF 688
            +VHP+TGY V RS++ AP  A AI   L         T       +  + WN LWP +R+     + FG+  +L+LD++G R  F  FF L    W GFL S LS  +L + +  +F
Sbjct:  358 IVHPSTGYMVARSMALAPVLAEAIVKGLGS-------TRMIRGSQLYHRVWNGLWPLDRRCIGECYSFGMETLLKLDLKGTRRLFDAFFDLDPKYWQGFLSSRLSVKELAILSLCLF 467
The following BLAST results are available for this feature:
BLAST of DN621615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NXS_SOLTU6.737e-1335.90Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06P08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621615 ID=DN621615; Name=DN621615; organism=Citrus sinensis; type=EST; length=692bp
ATACTGTAGGAACATATAAGAATCTGATTCAAAGCATCTCCACGTCTAAC
ACTGGCTTTGTAAACAGTAGCATCAAGTTTTGCATTTTGAAAAAAAATAA
AAATAAAAATAAAAAAGGGCTTCATTTGTCAAATTAACAGTTTACAGTAT
ACATGGAGTATATATACAAGCTCATTATGTGTCACGTATGGCAATCCAAA
ATATACCAAACAAGGGCTGAAATATGGAAAATACAAACTAACTATAAAGT
CAGGTATGTTCTTACCATAGTTGCTCCAGTTGGATCTGAAACTAGATGTC
TGATAAGGCACTTTCTCAGATCATTTGGTGCTATAATAAACATATAGAAG
GCAAATAGAATGAGATCGGCTGATGAGAGACTAGAACCAAGGAAACCGTG
CCACATCCACTTGGGTAATCGGAAGAAAGTGCGAAAGAATGTCCTGATGC
CCTCAATATCCAGTTGCAAAATGAGTGCTAGTCCAAAGAGGAAAAAAGCT
CTTTGGCGCTTCCTTTCCTGTGGCCAGAGAGTATTCCAAGCTTGCATTGA
GATATTCTCATTACTTTGTTCATGTGTAAGTCTACCTCTGGAATGATCGT
GTTTCAATATATATGCAATTGCAGAAGCATAGTTTGGAGCCTCTGACAGT
GATCTGACTACTGAGTAGCCAGTGGCTGGATGCACCATGCTA
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