DN621611

Overview
NameDN621611
Unique NameDN621611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: MLE_TODPA (Myosin catalytic light chain LC-1, mantle muscle OS=Todarodes pacificus PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = -2 
Query:  383 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR-KMKDTDSE-EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADV--DGDGQINYEEFVKVMMA 715
            R LG NPTEA++          G       E L +      KDT +  +E  EAF+ FD++  G IS+AE+R+V+  LGE++T+++ +++    D+  D DG I YE+ +K +MA
Sbjct:   39 RCLGMNPTEAQVHQH-GGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 152
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: EFCB2_MOUSE (EF-hand calcium-binding domain-containing protein 2 OS=Mus musculus GN=Efcab2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = -2 
Query:  386 RSLGQNPTEAELQDMINEVDADG-NGTIDFPEFLNLMARKMKDTD----SEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 715
            RSLG  PTE EL D I E++ +   G I F +F+ +M R + +      +E+ L  AF V D  + GF++  EL   MT  GE  + EE++EM+  A       INY +++ +M+
Sbjct:   46 RSLGCCPTEGELHDFIAEIEEEEPTGYIRFEKFIPVMTRALVERRYRPAAEDILLRAFEVLDPAKRGFLTKDELVKYMTEEGEPFSQEEMEEMLSAAIDPESNTINYRDYITMMV 160
The following BLAST results are available for this feature:
BLAST of DN621611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
MLE_TODPA6.655e-1135.65Myosin catalytic light chain LC-1, mantle muscle O... [more]
EFCB2_MOUSE8.691e-1135.65EF-hand calcium-binding domain-containing protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06P06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621611 ID=DN621611; Name=DN621611; organism=Citrus sinensis; type=EST; length=716bp
ACCAAAGAAATAAAATTATATGGCCAAGAAACCTAAGCTGATAGCCTGAT
ACATAAAATAGGATACATATTTCGACCAAAAGAAAAATAAACATCGCAAG
GGCAGAAATTAATGAAACACATTAAACAGACAACAACATTCATAGAACAG
CAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCGAGTCACAAGACA
TATTGACGAGGGAGACAACATTCTTCCTACACCATCAGGCCCATCACCAT
TAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGACTATCAAATTAAA
AATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTTAGTCAACCCATT
TTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCATCATAACCTTGAC
AAATTCCTCATAATTTATCTGGCCATCACCATCAACATCAGCTTCCCTTA
TCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTTTGTCATC
ACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAA
AACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCATCT
TCCTGGCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCCATTGCCA
TCAGCATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAGTGGGGTT
CTGACCCAGTGACCTC
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