DN621611

Overview
NameDN621611
Unique NameDN621611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: CALM1_BRALA (Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.849e-53
Identity = 101/112 (90.18%), Postives = 108/112 (96.43%), Query Frame = -2 
Query:  380 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 715
            RSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   38 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: CALM1_BRAFL (Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.849e-53
Identity = 101/112 (90.18%), Postives = 108/112 (96.43%), Query Frame = -2 
Query:  380 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 715
            RSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   38 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: CALM_SACJA (Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.416e-53
Identity = 101/112 (90.18%), Postives = 108/112 (96.43%), Query Frame = -2 
Query:  380 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 715
            RSLGQNPTEAEL DMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE+ EAF+VFDKD NGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVK+MM+K
Sbjct:   38 RSLGQNPTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: CALM_PLECO (Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.416e-53
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = -2 
Query:  380 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 715
            RSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKM+DTDSEEE+KEAF+VFDKD NG+ISAAELRHVMTNLGEKLTD EVDEMIREAD+DGDGQINYEEFVK+M++K
Sbjct:   38 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDNEVDEMIREADIDGDGQINYEEFVKMMLSK 149
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.416e-53
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = -2 
Query:  380 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 715
            RSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MA+KMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   38 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: CALM_CIOIN (Calmodulin OS=Ciona intestinalis PE=2 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 2.416e-53
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = -2 
Query:  380 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 715
            RSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQ+NYEEFV +M  K
Sbjct:   38 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVNMMTNK 149
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: CALM_CAEEL (Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 2.416e-53
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = -2 
Query:  380 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 715
            RSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M  K
Sbjct:   38 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTTK 149
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: CALM_STIJA (Calmodulin OS=Stichopus japonicus PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 4.120e-53
Identity = 100/112 (89.29%), Postives = 108/112 (96.43%), Query Frame = -2 
Query:  380 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 715
            RSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   38 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: CALM_MYXGL (Calmodulin OS=Myxine glutinosa PE=2 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 4.120e-53
Identity = 100/112 (89.29%), Postives = 109/112 (97.32%), Query Frame = -2 
Query:  380 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 715
            RSLGQNPTEAELQDMINEV+ADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   38 RSLGQNPTEAELQDMINEVNADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of DN621611 vs. ExPASy Swiss-Prot
Match: CALM_EUGGR (Calmodulin OS=Euglena gracilis PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 4.120e-53
Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = -2 
Query:  380 RSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 715
            RSLGQNPTEAELQDMINEVD DG+GTIDFPEFL LM+RKM DTD+EEE+KEAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK+MM+K
Sbjct:   38 RSLGQNPTEAELQDMINEVDQDGSGTIDFPEFLTLMSRKMHDTDTEEEIKEAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMSK 149
The following BLAST results are available for this feature:
BLAST of DN621611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
CALM1_BRALA1.849e-5390.18Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=... [more]
CALM1_BRAFL1.849e-5390.18Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2[more]
CALM_SACJA2.416e-5390.18Calmodulin OS=Saccharina japonica GN=cam PE=2 SV=1[more]
CALM_PLECO2.416e-5389.29Calmodulin OS=Pleurotus cornucopiae GN=CMD1 PE=1 S... [more]
CALM_ELEEL2.416e-5389.29Calmodulin OS=Electrophorus electricus GN=calm PE=... [more]
CALM_CIOIN2.416e-5391.07Calmodulin OS=Ciona intestinalis PE=2 SV=3[more]
CALM_CAEEL2.416e-5390.18Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1... [more]
CALM_STIJA4.120e-5389.29Calmodulin OS=Stichopus japonicus PE=1 SV=2[more]
CALM_MYXGL4.120e-5389.29Calmodulin OS=Myxine glutinosa PE=2 SV=3[more]
CALM_EUGGR4.120e-5391.07Calmodulin OS=Euglena gracilis PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06P06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621611 ID=DN621611; Name=DN621611; organism=Citrus sinensis; type=EST; length=716bp
ACCAAAGAAATAAAATTATATGGCCAAGAAACCTAAGCTGATAGCCTGAT
ACATAAAATAGGATACATATTTCGACCAAAAGAAAAATAAACATCGCAAG
GGCAGAAATTAATGAAACACATTAAACAGACAACAACATTCATAGAACAG
CAGAACAACTAAAATAATAAAAACCGAAAAGTTTTTCGAGTCACAAGACA
TATTGACGAGGGAGACAACATTCTTCCTACACCATCAGGCCCATCACCAT
TAAAAGACCATTGCTTCCTTTAGCCTGACCCTCATGACTATCAAATTAAA
AATTGTAAAAGAGAAAACTAGGAATCCCTTTATAATTTAGTCAACCCATT
TTATAAGTATTGGTGGGTTGGGGTCATTACTTGGCCATCATAACCTTGAC
AAATTCCTCATAATTTATCTGGCCATCACCATCAACATCAGCTTCCCTTA
TCATCTCATCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTTTGTCATC
ACATGGCGCAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAA
AACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCATCT
TCCTGGCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCCATTGCCA
TCAGCATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAGTGGGGTT
CTGACCCAGTGACCTC
back to top