DN621601

Overview
NameDN621601
Unique NameDN621601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.206e-23
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = -3
Query:  164 GQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 487
            G+V+  H+  ++  KL AA  + +L+++ FTA WC PCRFI+P+F  LA K+  VVF KVD+DE   VA  +++ ++PTF ++K  +++DKVVGA K  +E K+ +H+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHS 118          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.206e-23
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = -3
Query:  164 GQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 487
            G+V+  H+  ++  KL AA  + +L+++ FTA WC PCRFI+P+F  LA K+  VVF KVD+DE   VA  +++ ++PTF ++K  +++DKVVGA K  +E K+ +H+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHS 118          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.206e-23
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = -3
Query:  164 GQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 487
            G+V+  H+  ++  KL AA  + +L+++ FTA WC PCRFI+P+F  LA K+  VVF KVD+DE   VA  +++ ++PTF ++K  +++DKVVGA K  +E K+ +H+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHS 118          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.687e-23
Identity = 50/111 (45.05%), Postives = 76/111 (68.47%), Query Frame = -3
Query:  161 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 490
            EGQV+G H    +  +L+ A ++ +L+++ FTA+WC PCR I+P+F +LA K+ +  +F KVD+DE ++VA  + + ++PTF  IK+G  VDKVVGA K  L   IA+H G
Sbjct:    5 EGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTG 115          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.021e-22
Identity = 47/109 (43.12%), Postives = 72/109 (66.06%), Query Frame = -3
Query:  164 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 490
            E QV+  H+  E+  K   A  + +L+++ FTA+WCGPCR I+P  + LA K+  V F KVD+D+ +DVA  + + ++P+F  +K G+EV+++VGA K  L  KIA HA
Sbjct:    4 EAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVHA 112          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.333e-22
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = -3
Query:  167 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 490
            EG+V+  H+  ++  KL AA  + +L+++ FTATWC PCRFI+P+F +LA K+  VVF KVD+DE   VA  + + ++PTF F+K G+  + VVGA K  +   + +H
Sbjct:    4 EGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.274e-22
Identity = 44/104 (42.31%), Postives = 73/104 (70.19%), Query Frame = -3
Query:  176 GQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 487
            G V  I +   ++ KL  A R  ++V+  F+ATWCGPC+ ++P F  L+ K++ ++FL VD+DE  D ++ W+I + PTFFF+KNG+++ K+VGA+K  L++K+
Sbjct:   23 GNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.556e-21
Identity = 43/104 (41.35%), Postives = 70/104 (67.31%), Query Frame = -3
Query:  176 GQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 487
            G V  I +   ++ KL+ A+R  ++V+  F+A WCGPC+ I+P +  L+  Y  ++FL +D+DE  D +  W I + PTFFF+++G++VDK+VGA+K  L +KI
Sbjct:   24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.556e-21
Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = -3
Query:  167 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 424
            A RL+I+ F A WCGPCR ISP+F   +++Y    FLKV+ D ARD+  R+NI ++PTF F+KN ++VD V GA++ A+  KI QH
Sbjct:   21 ANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 106          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = -3
Query:  176 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 481
            V  I S S F+  LN+A    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA    +  +PTF F K G++VD+  GA+K  LE  I
Sbjct:    2 VKQIESKSAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of DN621601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
TRXH_BRARA1.206e-2343.52Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL1.206e-2343.52Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA1.206e-2343.52Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH2_BRANA2.687e-2345.05Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_FAGES1.021e-2243.12Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH3_ARATH1.333e-2243.52Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH9_ARATH2.274e-2242.31Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC9.556e-2141.35Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
NGLY1_CAEEL9.556e-2151.16Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_HORSE1.630e-2047.06Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621601 ID=DN621601; Name=DN621601; organism=Citrus sinensis; type=EST; length=495bp
TTTTTTTTTTTTTTTTTGAAGATAAATTTTAGGAGCAAGTTATTTTTATT
CAAATACTGAAATTTTATCAGACATTATTTGCTTGGCAAACAAATGGGTA
GGAAAGGCTTGCAAGCAGATATTACTCTAAAGTTCTCATTATTCAGGAGT
GGTTTTACTGGCCAGCATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTA
TCAGCCCCGACAACCTTGTCAACTTCCTTACCATTCTTTATGAAGAAAAA
GGTGGGAACAGAACCAATATTCCAGCGTGTAGCTACATCTCTTGCCTCAT
CTATGTCAACTTTCAAGAAAACAACCTTCGTGTATTTTGAGGCTAAATTT
GTAAAAAGAGGAGAAATGAAACGGCAGGGCCCGCACCATGTTGCAGTAAA
GTACAGAATCACCAGGCGCAATGCTCTAGTAGCAGCATTCAACTTAGTTT
CAAATTCACTATCTGAGTGAATACCCATTACTTGCCCTTCCCTTA
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