DN621601

Overview
NameDN621601
Unique NameDN621601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 46/102 (45.10%), Postives = 70/102 (68.63%), Query Frame = -3
Query:  176 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 481
            V  + + ++FE +L AA    +LV++ F+ATWCGPC+ I P F +L  K+  VVF+++D+D+A+DVAT  ++  +PTF F KNGK+V +  GA+K  LE  I
Sbjct:    2 VKSVGNLADFEAELKAAGE--KLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20
Identity = 39/105 (37.14%), Postives = 70/105 (66.67%), Query Frame = -3
Query:  170 QVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 484
            +V+   S + ++   N    + +L+++ F+A+WCGPCR I P    +A K+  V F+K+D+DE  DVA  +N+ ++PTF  +K GKE+++++GA K  LE+K+++
Sbjct:   26 RVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.015e-19
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = -3
Query:  176 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 481
            V  I S   F+  LN+A    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA    +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKYAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.015e-19
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = -3
Query:  176 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 481
            V  I S   F+  LN+A    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA+   +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKYAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.015e-19
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = -3
Query:  167 LNAATRALR-----LVILYFTATWCGPCRFISPLFTNLASK--YTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 442
            LNA + AL+     LV++ FTATWCGPC+ I P+F  L+    Y  VVFLKVD+D+A DV++  +I  +PTF F KNG+++D+  GA++  L++KI  H
Sbjct:    8 LNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 5.244e-19
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = -3
Query:  176 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 481
            V  I S   F+  LN+A    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA    +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKYAFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = -3
Query:  164 IHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 472
            I S   F+  L AA    +LV++ F+ATWCGPC+ I P F +L  KY+ VVFL+VD+D+ +DVA    +  +PTF F K G++V +  GA+K  LE  I ++A
Sbjct:    5 IESKEAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = -3
Query:  176 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 481
            V  I S + F+  L+AA    +LV++ F+ATWCGPC+ I P F +L+ KY+ V+FL+VD+D+ +DVA+   +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 8.944e-19
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = -3
Query:  176 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 481
            V  I S   F+  L+AA    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA+   +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIDSKDAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 1.526e-18
Identity = 43/105 (40.95%), Postives = 68/105 (64.76%), Query Frame = -3
Query:  167 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 481
            V  + S SE+++ L +  +   LV++ F ATWCGPC+ I+P+    A +Y+   F K+D+DE  DVA +  + S+PT  F K GKEV +VVGA+ +A+++ IA +
Sbjct:    2 VTQLKSASEYDSALASGDK---LVVVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANPAAIKQAIASN 103          
The following BLAST results are available for this feature:
BLAST of DN621601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO_CHICK2.780e-2045.10Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
TRXH2_ARATH6.194e-2037.14Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
THIO_SHEEP4.015e-1945.10Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_PIG4.015e-1945.10Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_ICTPU4.015e-1947.47Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO_BOVIN5.244e-1945.10Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MOUSE6.848e-1944.66Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_HUMAN6.848e-1944.12Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_CALJA8.944e-1945.10Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
TRX2_YEAST1.526e-1840.95Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621601 ID=DN621601; Name=DN621601; organism=Citrus sinensis; type=EST; length=495bp
TTTTTTTTTTTTTTTTTGAAGATAAATTTTAGGAGCAAGTTATTTTTATT
CAAATACTGAAATTTTATCAGACATTATTTGCTTGGCAAACAAATGGGTA
GGAAAGGCTTGCAAGCAGATATTACTCTAAAGTTCTCATTATTCAGGAGT
GGTTTTACTGGCCAGCATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTA
TCAGCCCCGACAACCTTGTCAACTTCCTTACCATTCTTTATGAAGAAAAA
GGTGGGAACAGAACCAATATTCCAGCGTGTAGCTACATCTCTTGCCTCAT
CTATGTCAACTTTCAAGAAAACAACCTTCGTGTATTTTGAGGCTAAATTT
GTAAAAAGAGGAGAAATGAAACGGCAGGGCCCGCACCATGTTGCAGTAAA
GTACAGAATCACCAGGCGCAATGCTCTAGTAGCAGCATTCAACTTAGTTT
CAAATTCACTATCTGAGTGAATACCCATTACTTGCCCTTCCCTTA
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