DN621601

Overview
NameDN621601
Unique NameDN621601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 1.526e-18
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = -3
Query:  176 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTF-FFIKNGKEVDKVVGADKSALERKI 481
            V  I S + F+  L+AA    +LV++ F+ATWCGPC+ I P F +L+ KY+ V+FL+VD+D+ +DVA+   +  +PTF FF K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKTAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATI 102          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.993e-18
Identity = 46/103 (44.66%), Postives = 65/103 (63.11%), Query Frame = -3
Query:  164 IHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 472
            I S   F+  L AA    +LV++ F+ATWCGPC+ I P F +L  KY+ VVFL+VD+D+ +DVA    +  +PTF F K G++V +  GA+K  LE  I + A
Sbjct:    5 IESKEAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITEFA 105          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.602e-18
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = -3
Query:  176 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 481
            V  I S + F+  L+ A    +LV++ F+ATWCGPC+ I P F +L+ KY+ VVFL+VD+D+ +DVA+   +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKAAFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 4.439e-18
Identity = 40/98 (40.82%), Postives = 67/98 (68.37%), Query Frame = -3
Query:  167 SEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 460
            +EF  +L+ A    +L+++ F+ATWCGPC+ I P F ++  KY  VVF+++D+D+A+DVA+  ++  +PTF F KN ++V +  GA+K  LE  I ++
Sbjct:    9 TEFRAELSNA--GSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.439e-18
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = -3
Query:  167 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 418
            RL+I+ F A WCGPCR ISP F  L+ ++    FLKV+ D ARD+  R++I ++PTF F KN ++VD V GA++SA+   I +H
Sbjct:   23 RLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKH 106          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.797e-18
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = -3
Query:  185 REGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALE 493
            R+   +  H  ++ + +L  A+   +LV+L F ATWCGPC+ ISP    L++++   VV LKVD+DE  D+A  +NI S+PTF F+KNG +V++  GA+   LE
Sbjct:    6 RDSTNLHFHLQADLDGQLTKASG--KLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLE 107          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.572e-18
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = -3
Query:  164 IHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 472
            + S +EF++ ++       LVI+ F A WCGPC+ I+P +   +  YTK+VF+KVD+DE  +V  + NI S+PTF   KNG  VD ++GA+ SAL++ I ++A
Sbjct:    5 VTSQAEFDSIISQN----ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 44/109 (40.37%), Postives = 68/109 (62.39%), Query Frame = -3
Query:  164 GQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 487
            G V+ I S + ++ +L       + +++ FTATWCGPC+ I+PLF  L++ Y  KV+FLKVD+D    VA    I ++PTF   K+G + D +VGA +  L+  +A+HA
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHA 111          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = -3
Query:  176 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 481
            V  I S S F+  L++A    +LV++ F+ATWCGPC+ I P F  L+ K+  VVF++VD+D+ +D+A    +  +PTF F K G++V +  GA+K  LE  I
Sbjct:    2 VKQIESKSAFQEVLDSAGD--KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.292e-17
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = -3
Query:  185 RLVILYFTATWCGPCRFISPLFTNLASKYTK-VVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALE 418
            +LV+L F ATWCGPC+ ISP    L+++Y   VV LKVD+DE  D+A  +NI S+PTF F+KNG +V++  GA+   LE
Sbjct:   21 KLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRLE 99          
The following BLAST results are available for this feature:
BLAST of DN621601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO_PONAB1.526e-1844.66Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIO_RAT1.993e-1844.66Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_MACMU2.602e-1844.12Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_OPHHA4.439e-1840.82Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
NGLY1_CAEBR4.439e-1848.81Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO2_DROME5.797e-1842.31Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
THIO_PLAF77.572e-1842.72Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
TRXH_CHLRE1.292e-1740.37Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
THIO_RABIT1.292e-1742.16Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO2_DROYA1.292e-1751.90Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621601 ID=DN621601; Name=DN621601; organism=Citrus sinensis; type=EST; length=495bp
TTTTTTTTTTTTTTTTTGAAGATAAATTTTAGGAGCAAGTTATTTTTATT
CAAATACTGAAATTTTATCAGACATTATTTGCTTGGCAAACAAATGGGTA
GGAAAGGCTTGCAAGCAGATATTACTCTAAAGTTCTCATTATTCAGGAGT
GGTTTTACTGGCCAGCATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTA
TCAGCCCCGACAACCTTGTCAACTTCCTTACCATTCTTTATGAAGAAAAA
GGTGGGAACAGAACCAATATTCCAGCGTGTAGCTACATCTCTTGCCTCAT
CTATGTCAACTTTCAAGAAAACAACCTTCGTGTATTTTGAGGCTAAATTT
GTAAAAAGAGGAGAAATGAAACGGCAGGGCCCGCACCATGTTGCAGTAAA
GTACAGAATCACCAGGCGCAATGCTCTAGTAGCAGCATTCAACTTAGTTT
CAAATTCACTATCTGAGTGAATACCCATTACTTGCCCTTCCCTTA
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