DN621601

Overview
NameDN621601
Unique NameDN621601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.203e-17
Identity = 41/101 (40.59%), Postives = 68/101 (67.33%), Query Frame = -3
Query:  164 SEFET--KLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 460
            ++F+T  + ++A    +LV++ F ATWCGPC+ I+P+    + +Y +  F K+D+DE  DVA +  + ++PT    KNGKEV KVVGA+ +A+++ IA +A
Sbjct:    3 TQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAANA 103          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.877e-17
Identity = 34/84 (40.48%), Postives = 59/84 (70.24%), Query Frame = -3
Query:  167 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 418
            +++IL F ATWCGPC+ I+PL+  LA+ +  ++F KVD+DEA D+ +++++  +PTF F KNG  ++ + G  +  L +K+ +H
Sbjct:   28 KIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 111          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.410e-17
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = -3
Query:  173 ATWCGPCRFISPLFTNLASKYT--KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIA 394
            A WCGPC+ ISPLF+ LASKY   K VF KV++DE R +A+   + ++PTF F +NGK++D + GA+  AL+ K+A
Sbjct:   28 ADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKVA 103          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 39/89 (43.82%), Postives = 61/89 (68.54%), Query Frame = -3
Query:  185 KLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY--TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALE 445
            + N  T + +++I+ F ATWCGPCR ISP+F   + KY    +VF KVD+D A D++    I ++PTF   K+G+++D++VGA+ +ALE
Sbjct:   10 EFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALE 98          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TXNL1_RAT (Thioredoxin-like protein 1 OS=Rattus norvegicus GN=Txnl1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = -3
Query:  167 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 481
            V  + SD +F+ +L+ A    RL ++ FT   CGPC  I+P F+++++KY + VFL+VD+ + +  A   NI + PTF F +N   +D+  GAD   LE KI QH
Sbjct:    4 VKPVGSDPDFQPELSGA--GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TXNL1_MOUSE (Thioredoxin-like protein 1 OS=Mus musculus GN=Txnl1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = -3
Query:  167 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 481
            V  + SD +F+ +L+ A    RL ++ FT   CGPC  I+P F+++++KY + VFL+VD+ + +  A   NI + PTF F +N   +D+  GAD   LE KI QH
Sbjct:    4 VKPVGSDPDFQPELSGA--GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TXNL1_HUMAN (Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = -3
Query:  167 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 481
            V  + SD +F+ +L+ A    RL ++ FT   CGPC  I+P F+++++KY + VFL+VD+ + +  A   NI + PTF F +N   +D+  GAD   LE KI QH
Sbjct:    4 VKPVGSDPDFQPELSGA--GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 7.087e-16
Identity = 36/93 (38.71%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  164 LNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 442
            L AA +  +L++  F ATWCGPC+ ++P    +A +  KV+F+K+D+DE +DVA ++ + ++PT    KNG E+  VVGA+++ +   I  +A
Sbjct:   15 LEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELIQANA 107          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.087e-16
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = -3
Query:  161 RLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 418
            +LV++ F A WCGPC+ I+P    LA +Y+ +VV LKV++DE  D+   +N+ S+PTF FIK G  ++  VG +   L + + +HAG
Sbjct:   21 KLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKHAG 107          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 9.256e-16
Identity = 32/81 (39.51%), Postives = 57/81 (70.37%), Query Frame = -3
Query:  176 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 418
            +LV++ F ATWCGPC+ I+P F   ++ Y+   F+KVD+D+  ++A    + ++P+FF  KNG++++++VGA+ + LE  I
Sbjct:   19 KLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASI 99          
The following BLAST results are available for this feature:
BLAST of DN621601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
TRX1_YEAST2.203e-1740.59Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO1_CAEEL2.877e-1740.48Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
TXL1_SCHPO6.410e-1751.32Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
THIO_COPCM8.371e-1743.82Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
TXNL1_RAT1.093e-1640.00Thioredoxin-like protein 1 OS=Rattus norvegicus GN... [more]
TXNL1_MOUSE1.093e-1640.00Thioredoxin-like protein 1 OS=Mus musculus GN=Txnl... [more]
TXNL1_HUMAN1.093e-1640.00Thioredoxin-like protein 1 OS=Homo sapiens GN=TXNL... [more]
THIO_ECHGR7.087e-1638.71Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIOT_DROME7.087e-1642.53Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
TRX1_SCHPO9.256e-1639.51Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621601 ID=DN621601; Name=DN621601; organism=Citrus sinensis; type=EST; length=495bp
TTTTTTTTTTTTTTTTTGAAGATAAATTTTAGGAGCAAGTTATTTTTATT
CAAATACTGAAATTTTATCAGACATTATTTGCTTGGCAAACAAATGGGTA
GGAAAGGCTTGCAAGCAGATATTACTCTAAAGTTCTCATTATTCAGGAGT
GGTTTTACTGGCCAGCATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTA
TCAGCCCCGACAACCTTGTCAACTTCCTTACCATTCTTTATGAAGAAAAA
GGTGGGAACAGAACCAATATTCCAGCGTGTAGCTACATCTCTTGCCTCAT
CTATGTCAACTTTCAAGAAAACAACCTTCGTGTATTTTGAGGCTAAATTT
GTAAAAAGAGGAGAAATGAAACGGCAGGGCCCGCACCATGTTGCAGTAAA
GTACAGAATCACCAGGCGCAATGCTCTAGTAGCAGCATTCAACTTAGTTT
CAAATTCACTATCTGAGTGAATACCCATTACTTGCCCTTCCCTTA
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