DN621601

Overview
NameDN621601
Unique NameDN621601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO5_DICDI (Putative thioredoxin-5 OS=Dictyostelium discoideum GN=trxE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 9.256e-16
Identity = 41/99 (41.41%), Postives = 64/99 (64.65%), Query Frame = -3
Query:  176 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNL--ASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 466
            ++SE+E +L  A  A    ++Y TATWCGPCR I+P+FTN+  A + +K+ F KVD+D  + +    ++  VPTF   +NG+E ++  GA+K ALE  +
Sbjct:    7 NESEYEAELKNAPVA----VVYLTATWCGPCRAIAPVFTNISNAPENSKITFFKVDVDALKKLPVCESLQGVPTFIAYRNGEEQERFSGANKVALENMV 101          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.209e-15
Identity = 48/105 (45.71%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  170 QVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 484
            +V  I S  +FE  L  A    RLV + F+ATWCGPCR I P F  L+ K+  VVFL+VD D   +V     I  VPTF F K  ++VD++ GA K  LE  IA+
Sbjct:  449 KVKVILSKEDFEASLKEAGE--RLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVIAE 551          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.889e-14
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = -3
Query:  170 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 490
            EG V  I    EFE  L  A    +LV + F+A WCGPCR + PLF +L+ K+  V+FL+VD ++   +     I  +PTF F KN ++V +  GA    LER I++
Sbjct:  409 EGLVRVIKDKEEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.889e-14
Identity = 36/85 (42.35%), Postives = 58/85 (68.24%), Query Frame = -3
Query:  167 RLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEV-DKVVGADKSALERKIAQH 418
            +LV++ FTA+WCGPC+ I+P +  +A ++  V+F KVD+DE  + A    I ++PTF F K+GK + D V GA+++ L  KI ++
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKN 105          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 77.411 bits (189), Expect = 3.889e-14
Identity = 39/104 (37.50%), Postives = 65/104 (62.50%), Query Frame = -3
Query:  161 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQHAG 466
            +D  F+T++  + +A   V++ F A+WCGPC  + P+   LA  Y  K +  K+++DE  ++A ++ I S+PT   IK GK VD++VGA  K+ + +KI +H G
Sbjct:    8 TDKNFQTEILDSDKA---VLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEHIG 108          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 5.079e-14
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = -3
Query:  176 IHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 472
            I S +EF+ K+     A   V++   ATWCGPC+ I+P     A  YT   F ++D+DE  +VA    I ++PTF   K+G++V  VVGA+  ALE  I
Sbjct:   10 ITSKAEFQEKV---LNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGI 105          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.633e-14
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  185 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALE 481
            V  I S +E++ K+  AT     V++ F ATWCGPC+ I+P    L+  +T + F KVD+DE  +VA    + ++PTF F K G+  ++V GA+ +A++
Sbjct:    3 VTPIKSVAEYKEKVTDATGP---VVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQ 98          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.633e-14
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = -3
Query:  164 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALERKIAQHA 424
            A  LV++ F A WCGPC+ ++P+  +L ++ + V+  KV+ID+    A ++ + S+PT    K+GKEVD+VVG  DK +L R I QH+
Sbjct:   15 ATGLVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQHS 102          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRX3_YEAST (Thioredoxin-3, mitochondrial OS=Saccharomyces cerevisiae GN=TRX3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.663e-14
Identity = 37/97 (38.14%), Postives = 57/97 (58.76%), Query Frame = -3
Query:  176 TKLNAATRALRLV------ILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 448
            TKL   T    L+      ++ F ATWCGPC+ + P  T L   Y  V F+K D+DE+ D+A    + ++PTF   K+G+ + K++GA+ +ALE+ I
Sbjct:   28 TKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKIIGANPTALEKGI 124          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.478e-13
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = -3
Query:  167 LVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALERKIAQH 415
            LV++ F A WCGPC+ ++P+   LA++   V  LKVDID +   A ++++ S+PT    K+GKEV++ VG  DK +L + I++H
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
The following BLAST results are available for this feature:
BLAST of DN621601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO5_DICDI9.256e-1641.41Putative thioredoxin-5 OS=Dictyostelium discoideum... [more]
TXND2_HUMAN1.209e-1545.71Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
TXND2_MOUSE3.889e-1440.19Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
THIO_GEOCY3.889e-1442.35Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
THIO_CHLLT3.889e-1437.50Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO_EMENI5.079e-1440.40Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_PENCH6.633e-1438.38Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_CHLCV6.633e-1442.05Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
TRX3_YEAST8.663e-1438.14Thioredoxin-3, mitochondrial OS=Saccharomyces cere... [more]
THIO_CHLTR1.478e-1341.67Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621601 ID=DN621601; Name=DN621601; organism=Citrus sinensis; type=EST; length=495bp
TTTTTTTTTTTTTTTTTGAAGATAAATTTTAGGAGCAAGTTATTTTTATT
CAAATACTGAAATTTTATCAGACATTATTTGCTTGGCAAACAAATGGGTA
GGAAAGGCTTGCAAGCAGATATTACTCTAAAGTTCTCATTATTCAGGAGT
GGTTTTACTGGCCAGCATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTA
TCAGCCCCGACAACCTTGTCAACTTCCTTACCATTCTTTATGAAGAAAAA
GGTGGGAACAGAACCAATATTCCAGCGTGTAGCTACATCTCTTGCCTCAT
CTATGTCAACTTTCAAGAAAACAACCTTCGTGTATTTTGAGGCTAAATTT
GTAAAAAGAGGAGAAATGAAACGGCAGGGCCCGCACCATGTTGCAGTAAA
GTACAGAATCACCAGGCGCAATGCTCTAGTAGCAGCATTCAACTTAGTTT
CAAATTCACTATCTGAGTGAATACCCATTACTTGCCCTTCCCTTA
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