DN621601

Overview
NameDN621601
Unique NameDN621601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.930e-13
Identity = 30/79 (37.97%), Postives = 54/79 (68.35%), Query Frame = -3
Query:  176 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 412
            ++ +FTA WC P  F++  F  LA  Y   +FL VD+DE ++VA++  + ++PTF F+K+G  +DK+VGA+   +++++
Sbjct:   27 IVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +DS+F++K+ +  +     ++ F ATWCGPC+ I+P+   LA  Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDSDFDSKIESGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.292e-13
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +DS+F++K+ +  +     ++ F ATWCGPC+ I+P+   LA  Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDSDFDSKIESGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.299e-13
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = -3
Query:  167 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 412
            V++ F A WCGPCR I+P+   LA +Y  K+   K++ DE+ + AT++ I S+PT  F KNG+  D V+GA  K+ L  K+ ++
Sbjct:   88 VLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKY 171          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = -3
Query:  167 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 412
            V++ F A WCGPC+ I+P+   LA +Y+ K+   K++ DEA  +AT++NI S+PT  F KNG+  + ++GA  KS L   I ++
Sbjct:   95 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY 178          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO1_DROYA (Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.615e-13
Identity = 35/102 (34.31%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  170 IHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 472
            + + ++F  ++ AA    +L++L F A WCGPC+ +     +LA KY TK V LK+D+D+  ++  R+ + S+PTF F++N + +    GAD+  L   +A+
Sbjct:    4 VRTMTDFHKRIEAADD--KLIVLDFYANWCGPCKDMESTVKSLARKYSTKAVVLKIDVDKFEELTERYKVRSMPTFVFLRNNRRLAAFSGADEHKLTNMMAK 103          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TXND2_RAT (Thioredoxin domain-containing protein 2 OS=Rattus norvegicus GN=Txndc2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.334e-13
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = -3
Query:  170 EGQVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 490
            EG V  I    EFE  L  A    +LV + F+A WCGPCR + P F +L+ K+  V+FL+VD ++   +     +  +PTF F KN ++V +  GA    LE+ IA+
Sbjct:  444 EGMVRVIKDKEEFEEVLKDAGE--KLVAVDFSAPWCGPCRKMRPHFHSLSLKHEDVIFLEVDTEDCEQLVQDCEVFHLPTFQFYKNEEKVGEFSGALVEKLEKSIAE 548          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +D++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +D++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +D++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
The following BLAST results are available for this feature:
BLAST of DN621601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
TRXL4_ARATH1.930e-1337.97Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO_STAES3.292e-1339.77Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ3.292e-1339.77Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
TRXM_PEA4.299e-1341.67Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
TRXM_SPIOL5.615e-1341.67Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO1_DROYA5.615e-1334.31Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=... [more]
TXND2_RAT7.334e-1338.32Thioredoxin domain-containing protein 2 OS=Rattus ... [more]
THIO_STAAW9.578e-1338.64Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU9.578e-1338.64Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS9.578e-1338.64Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06O24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621601 ID=DN621601; Name=DN621601; organism=Citrus sinensis; type=EST; length=495bp
TTTTTTTTTTTTTTTTTGAAGATAAATTTTAGGAGCAAGTTATTTTTATT
CAAATACTGAAATTTTATCAGACATTATTTGCTTGGCAAACAAATGGGTA
GGAAAGGCTTGCAAGCAGATATTACTCTAAAGTTCTCATTATTCAGGAGT
GGTTTTACTGGCCAGCATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTA
TCAGCCCCGACAACCTTGTCAACTTCCTTACCATTCTTTATGAAGAAAAA
GGTGGGAACAGAACCAATATTCCAGCGTGTAGCTACATCTCTTGCCTCAT
CTATGTCAACTTTCAAGAAAACAACCTTCGTGTATTTTGAGGCTAAATTT
GTAAAAAGAGGAGAAATGAAACGGCAGGGCCCGCACCATGTTGCAGTAAA
GTACAGAATCACCAGGCGCAATGCTCTAGTAGCAGCATTCAACTTAGTTT
CAAATTCACTATCTGAGTGAATACCCATTACTTGCCCTTCCCTTA
back to top