DN621601

Overview
NameDN621601
Unique NameDN621601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +D++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +D++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +D++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +D++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +D++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +D++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +D++F++K+ +  +     ++ F ATWCGPC+ I+P+   LA+ Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDADFDSKVESGVQ-----LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  164 LVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALERKIAQHA 415
            LV++ F A WCGPCR ++P+  NLA++   V   K++IDE    A  + + S+PT    K+G EV +VVG  DK  L   I +HA
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKHA 102          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = -3
Query:  167 LVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALERKIAQH 415
            LV++ F A WCGPC+ ++P+   LA++   V  LK+DID +   A ++ + S+PT    K+GKEV++ VG  DK +L + I++H
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.634e-12
Identity = 38/102 (37.25%), Postives = 60/102 (58.82%), Query Frame = -3
Query:  167 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 466
            +D  FE ++     + +LV++ F A WCGPCR ISP+   LA +Y  +V  +K++ DE   ++  + I S+PT    K+GK VD V+GA  KS L   + ++
Sbjct:    8 TDFSFEKEV---VNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKY 106          
The following BLAST results are available for this feature:
BLAST of DN621601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO_STAAR9.578e-1338.64Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN9.578e-1338.64Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM9.578e-1338.64Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC9.578e-1338.64Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB9.578e-1338.64Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA89.578e-1338.64Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA39.578e-1338.64Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_CHLPN9.578e-1342.35Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO_CHLMU9.578e-1340.48Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_CYACA1.634e-1237.25Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621601 ID=DN621601; Name=DN621601; organism=Citrus sinensis; type=EST; length=495bp
TTTTTTTTTTTTTTTTTGAAGATAAATTTTAGGAGCAAGTTATTTTTATT
CAAATACTGAAATTTTATCAGACATTATTTGCTTGGCAAACAAATGGGTA
GGAAAGGCTTGCAAGCAGATATTACTCTAAAGTTCTCATTATTCAGGAGT
GGTTTTACTGGCCAGCATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTA
TCAGCCCCGACAACCTTGTCAACTTCCTTACCATTCTTTATGAAGAAAAA
GGTGGGAACAGAACCAATATTCCAGCGTGTAGCTACATCTCTTGCCTCAT
CTATGTCAACTTTCAAGAAAACAACCTTCGTGTATTTTGAGGCTAAATTT
GTAAAAAGAGGAGAAATGAAACGGCAGGGCCCGCACCATGTTGCAGTAAA
GTACAGAATCACCAGGCGCAATGCTCTAGTAGCAGCATTCAACTTAGTTT
CAAATTCACTATCTGAGTGAATACCCATTACTTGCCCTTCCCTTA
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