DN621601

Overview
NameDN621601
Unique NameDN621601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO1_DROME (Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 33/102 (32.35%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  170 IHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQ 472
            + + +++  ++ AA    +L++L F ATWCGPC+ +     +LA KY+ K V LK+D+D+  ++  R+ + S+PTF F++  + +    GAD+  L   +A+
Sbjct:    4 VRTMNDYHKRIEAADD--KLIVLDFYATWCGPCKEMESTVKSLARKYSSKAVVLKIDVDKFEELTERYKVRSMPTFVFLRQNRRLASFAGADEHKLTNMMAK 103          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12
Identity = 30/106 (28.30%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  167 QVMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 484
            +V  + S  ++ T+++A     ++ ++ F A WCGPC+++ P    L+ +  K  F+ V+ D+  D+A +  + ++PT    + G+E+D++VGAD   L   +A++
Sbjct:   18 KVNAVESFGDYNTRISAD----KVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = -3
Query:  176 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKI 466
            SDSE++TK+  +      V++ F A WCGPCR I P+   LA  +  K  F K++ DE+ + A R+ I SVPT    K G++ D ++GA  +  LE+ I
Sbjct:   92 SDSEWQTKVLESDVP---VLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTI 187          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  161 RLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQHAG 418
            ++ ++ F A WCGPC  + P+   LA  Y  K +  K+++DE  + A ++ I S+PT   IK GK VD++VGA  K+ + +K+ +H G
Sbjct:   22 KVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKLDEHIG 109          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: GLRX3_BOVIN (Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12
Identity = 34/106 (32.08%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  164 VMGIHSDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 481
            V+ + S  +FE  L    RA  L++++F A W   C  ++ +   LA ++ +V F+K++ +   +V+ ++ I SVPTF F KN +++D++ GA    L +K+ +HA
Sbjct:   12 VVEVGSSGQFEELLRL--RAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHA 115          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = -3
Query:  167 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALERKIAQH 466
            +DS F+  + +        ++ F ATWCGPC+ I+P+   LA  Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG   K  L   I +H
Sbjct:    7 TDSNFDDNIQSGVN-----LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKH 103          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  206 SDSEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 466
            +DS F+  + +  +     ++ F ATWCGPC+ I+P+   LA  Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:    7 TDSNFDENIQSGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVG 89          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO3_DICDI (Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = -3
Query:  188 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSAL 412
            V++ F+A WCGPCR I+P+F  L++++T   F+ VDID+         I SVPTF+F  NG +V +  GA+++ L
Sbjct:   22 VVVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNGAKVSEFSGANEATL 96          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO1_DICDI (Thioredoxin-1 OS=Dictyostelium discoideum GN=trxA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = -3
Query:  188 VILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSAL 412
            V++ F+A WCGPCR ISP+F  L++++    FL VDID+         I SVPTF F +NG +V +  GA +S L
Sbjct:   23 VVVDFSAVWCGPCRAISPVFEKLSNEFITFTFLHVDIDKLNVHPIVSKIKSVPTFHFYRNGSKVSEFSGASESIL 97          
BLAST of DN621601 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = -3
Query:  167 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKIAQH 412
            V++ F A WCGPCR ++P+   +A +Y  K+  +KV+ DE   VA+++ I S+PT    K G++VD VVGA  K+ L + + +H
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKH 106          
The following BLAST results are available for this feature:
BLAST of DN621601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
THIO1_DROME2.134e-1232.35Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE... [more]
TRX2_SCHPO2.787e-1228.30Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
TRXM4_ARATH3.640e-1239.39Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
THIO2_CHLTE3.640e-1237.50Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
GLRX3_BOVIN3.640e-1232.08Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1[more]
THIO_STAS14.754e-1237.25Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_STAHJ4.754e-1238.64Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO3_DICDI4.754e-1242.67Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC ... [more]
THIO1_DICDI4.754e-1245.33Thioredoxin-1 OS=Dictyostelium discoideum GN=trxA ... [more]
THIO1_ANASP4.754e-1240.48Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621601 ID=DN621601; Name=DN621601; organism=Citrus sinensis; type=EST; length=495bp
TTTTTTTTTTTTTTTTTGAAGATAAATTTTAGGAGCAAGTTATTTTTATT
CAAATACTGAAATTTTATCAGACATTATTTGCTTGGCAAACAAATGGGTA
GGAAAGGCTTGCAAGCAGATATTACTCTAAAGTTCTCATTATTCAGGAGT
GGTTTTACTGGCCAGCATGTTGTGCAATCTTCCTTTCAAGTGCACTTTTA
TCAGCCCCGACAACCTTGTCAACTTCCTTACCATTCTTTATGAAGAAAAA
GGTGGGAACAGAACCAATATTCCAGCGTGTAGCTACATCTCTTGCCTCAT
CTATGTCAACTTTCAAGAAAACAACCTTCGTGTATTTTGAGGCTAAATTT
GTAAAAAGAGGAGAAATGAAACGGCAGGGCCCGCACCATGTTGCAGTAAA
GTACAGAATCACCAGGCGCAATGCTCTAGTAGCAGCATTCAACTTAGTTT
CAAATTCACTATCTGAGTGAATACCCATTACTTGCCCTTCCCTTA
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